Package: flowPlots

Version: 1.1.0

Command: E:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --no-vignettes --timings --no-multiarch flowPlots_1.1.0.tar.gz

StartedAt: 2011-07-07 01:42:58 -0700 (Thu, 07 Jul 2011)

EndedAt: 2011-07-07 01:43:49 -0700 (Thu, 07 Jul 2011)

EllapsedTime: 51.1 seconds

RetCode: 0

Status:  OK

CheckDir: flowPlots.Rcheck

Warnings: 0

* using log directory 'E:/biocbld/bbs-2.9-bioc/meat/flowPlots.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-06-03 r56036)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'flowPlots/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'flowPlots' version '1.1.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'flowPlots' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'flowPlots' ...
** R
** data
**  moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'flowPlots.Rnw' 
** testing if installed package can be loaded

* DONE (flowPlots)

name	user	system	elapsed
GroupListBoxplot	0.11	0.00	0.11
StackedData-class	10.39	0.00	10.56
adultsNeonates	0	0	0
computeMarginalData-methods	2.43	0.00	2.45
computeMarkers-methods	0	0	0
computePFDData-methods	2.18	0.00	2.22
computePFDGroupStatsList	0.35	0.04	0.39
computePFDPartsData-methods	2.94	0.00	3.11
computeProfileData-methods	2.98	0.03	3.13
legendPFDStatsGroupNames	0.14	0.00	0.14
makeBarplotData	0.02	0.00	0.01
makeDataList	0.06	0.00	0.07
makeTernaryData	0.14	0.00	0.42
marginalDF	0.00	0.00	0.06
marginalData-methods	0.01	0.00	0.05
markerMatrix	0.00	0.00	0.03
markers-methods	0.02	0.00	0.06
pfdDF	0.02	0.00	0.02
pfdData-methods	0	0	0
pfdPartsData-methods	0.01	0.00	0.04
pfdPartsList	0.00	0.02	0.05
profileDF	0.00	0.00	0.03
profileData-methods	0	0	0
readStackedData-methods	0.06	0.00	0.06
stackedData-methods	0.09	0.00	0.33