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Package 157/479HostnameOS / ArchBUILDCHECKBUILD BIN
flowMerge 2.1.6
Greg Finak
Snapshot Date: 2011-07-06 19:21:50 -0700 (Wed, 06 Jul 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/flowMerge
Last Changed Rev: 56173 / Revision: 56603
Last Changed Date: 2011-06-14 10:47:38 -0700 (Tue, 14 Jun 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: flowMerge
Version: 2.1.6
Command: /Library/Frameworks/R.framework/Versions/2.14/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch flowMerge_2.1.6.tar.gz
StartedAt: 2011-07-07 02:53:27 -0700 (Thu, 07 Jul 2011)
EndedAt: 2011-07-07 02:56:46 -0700 (Thu, 07 Jul 2011)
EllapsedTime: 198.8 seconds
RetCode: 0
Status:  OK 
CheckDir: flowMerge.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.9-bioc/meat/flowMerge.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-06-22 r56208)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'flowMerge/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'flowMerge' version '2.1.6'
* checking package name space information ... OK
* checking package dependencies ... NOTE
Packages which this enhances but not available for checking:
  'doMC' 'multicore'
* checking if this is a source package ... OK
* checking whether package 'flowMerge' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

flowMerge.Rcheck/00install.out:

* installing *source* package 'flowMerge' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: graph
Loading required package: grid
Loading required package: mnormt
Loading required package: ellipse
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

Loading required package: flowCore
Loading required package: rrcov
Loading required package: robustbase
Loading required package: pcaPP
Loading required package: mvtnorm
Scalable Robust Estimators with High Breakdown Point (version 1.3-01)

Attaching package: 'flowCore'

The following object(s) are masked from 'package:stats':

    alias, filter


Attaching package: 'flowClust'

The following object(s) are masked from 'package:mvtnorm':

    dmvt

The following object(s) are masked from 'package:graphics':

    box

Loading required package: iterators
Loading required package: codetools
Creating a generic function for "merge" from package "base" in package "flowMerge"
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'flowMerge.Rnw' 
** testing if installed package can be loaded
Scalable Robust Estimators with High Breakdown Point (version 1.3-01)

* DONE (flowMerge)

flowMerge.Rcheck/flowMerge-Ex.timings:

nameusersystemelapsed
NENT0.3800.0300.433
fitPiecewiseLinreg0.2130.0240.260
flowClust.res0.0430.0030.047
flowMerge-package0.3450.0300.378
flowObj0.1930.0220.221
map0.0060.0000.007
merge-methods0.2850.0210.307
merge0.1880.0220.214
pFlowMerge51.366 9.59163.378
plot-methods0.2420.0280.276
updateU0.3400.0280.372