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Package 93/479HostnameOS / ArchBUILDCHECKBUILD BIN
clippda 1.3.0
Stephen Nyangoma
Snapshot Date: 2011-07-06 19:21:50 -0700 (Wed, 06 Jul 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/clippda
Last Changed Rev: 56066 / Revision: 56603
Last Changed Date: 2011-06-08 15:07:12 -0700 (Wed, 08 Jun 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK [ OK ] OK 
moscato1 Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: clippda
Version: 1.3.0
Command: D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --no-vignettes --timings --no-multiarch clippda_1.3.0.tar.gz
StartedAt: 2011-07-07 03:06:40 -0700 (Thu, 07 Jul 2011)
EndedAt: 2011-07-07 03:14:14 -0700 (Thu, 07 Jul 2011)
EllapsedTime: 454.0 seconds
RetCode: 0
Status:  OK  
CheckDir: clippda.Rcheck
Warnings: 0

Command output

* using log directory 'D:/biocbld/bbs-2.9-bioc/meat/clippda.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-06-03 r56036)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'clippda/DESCRIPTION' ... OK
* this is package 'clippda' version '1.3.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'clippda' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... NOTE
Found the following CITATION file(s) in a non-standard place:
  CITATION
Most likely 'inst/CITATION' should be used instead.
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

clippda.Rcheck/00install.out:

* installing *source* package 'clippda' ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'clippda.Rnw' 
** testing if installed package can be loaded

* DONE (clippda)

clippda.Rcheck/clippda-Ex.timings:

nameusersystemelapsed
aclinicalProteomicsData-class0.220.010.47
aclinicalProteomicsData-methods0.590.140.93
betweensampleVariance5.940.076.99
checkNo.replicates0.30.00.3
clippda-package156.69 1.15167.03
fisherInformation0.200.020.22
liverRawData0.010.000.01
liver_pheno0.000.010.02
liverdata6.210.007.83
mostSimilarTwo000
negativeIntensitiesCorrection2.150.002.29
phenoDataFrame0.100.020.11
pheno_urine0.000.020.02
preProcRepeatedPeakData5.080.005.31
proteomicsExprsData0.340.010.47
proteomicspData0.110.000.14
replicateCorrelations8.050.008.19
sampleClusteredData2.140.002.14
sampleSize92.23 0.0693.25
sampleSize3DscatterPlots0.190.023.36
sampleSizeContourPlots0.060.001.29
sampleSizeParameters48.53 0.0148.86
sample_technicalVariance11.58 0.0011.64
spectrumFilter4.940.004.97