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Package 1/479HostnameOS / ArchBUILDCHECKBUILD BIN
a4 1.1.2
Tobias Verbeke
Snapshot Date: 2011-07-06 19:21:50 -0700 (Wed, 06 Jul 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/a4
Last Changed Rev: 56260 / Revision: 56603
Last Changed Date: 2011-06-16 18:18:20 -0700 (Thu, 16 Jun 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  WARNINGS  OK 
moscato1 Windows Server 2008 R2 Enterprise (64-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: a4
Version: 1.1.2
Command: mkdir a4.buildbin-libdir && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=a4.buildbin-libdir a4_1.1.2.tar.gz >a4-install.out 2>&1 && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --library=a4.buildbin-libdir --install="check:a4-install.out" --force-multiarch --no-vignettes --timings a4_1.1.2.tar.gz && mv a4.buildbin-libdir/* a4.Rcheck/ && rmdir a4.buildbin-libdir
StartedAt: 2011-07-07 03:53:30 -0700 (Thu, 07 Jul 2011)
EndedAt: 2011-07-07 03:56:27 -0700 (Thu, 07 Jul 2011)
EllapsedTime: 177.0 seconds
RetCode: 0
Status:  OK  
CheckDir: a4.Rcheck
Warnings: 0

Command output

* using log directory 'D:/biocbld/bbs-2.9-bioc/meat/a4.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-06-20 r56188)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'a4/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'a4' version '1.1.2'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'a4' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking for missing documentation entries ... OK
* checking examples ... NONE
* checking for unstated dependencies in vignettes ... NOTE
'library' or 'require' call not declared from: 'Cairo'
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

a4.Rcheck/00install.out:


install for i386

* installing *source* package 'a4' ...
** R
** inst
** preparing package for lazy loading
Loading required package: grid
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

Loading required package: AnnotationDbi
Loading required package: annaffy
Loading required package: GO.db
Loading required package: DBI

Loading required package: KEGG.db

Loading required package: mpm
Loading required package: MASS
Loading required package: KernSmooth
KernSmooth 2.23 loaded
Copyright M. P. Wand 1997-2009

mpm version 1.0-17

Loading required package: genefilter

Attaching package: 'genefilter'

The following object(s) are masked from 'package:MASS':

    area

Loading required package: limma
Loading required package: multtest
Loading required package: glmnet
Loading required package: Matrix
Loading required package: lattice

Attaching package: 'Matrix'

The following object(s) are masked from 'package:base':

    det

Loaded glmnet 1.7 
Loading required package: a4Preproc
Loading required package: a4Core

Attaching package: 'a4Core'

The following object(s) are masked from 'package:limma':

    topTable

Loading required package: gplots
Loading required package: gtools
Loading required package: gdata
gdata: read.xls support for 'XLS' (Excel 97-2004) files ENABLED.

gdata: read.xls support for 'XLSX' (Excel 2007+) files ENABLED.

Attaching package: 'gdata'

The following object(s) are masked from 'package:Biobase':

    combine

The following object(s) are masked from 'package:stats':

    nobs

The following object(s) are masked from 'package:utils':

    object.size

Loading required package: caTools
Loading required package: bitops

Attaching package: 'gplots'

The following object(s) are masked from 'package:multtest':

    wapply

The following object(s) are masked from 'package:stats':

    lowess


a4Base version 1.1.3

Loading required package: MLInterfaces
Loading required package: rpart
Loading required package: rda
Loading required package: annotate
Loading required package: cluster
Loading required package: sfsmisc
Loading required package: ROCR
Loading required package: pamr
Loading required package: survival
Loading required package: splines
Loading required package: varSelRF
Loading required package: randomForest
randomForest 4.6-2
Type rfNews() to see new features/changes/bug fixes.

Attaching package: 'randomForest'

The following object(s) are masked from 'package:gdata':

    combine

The following object(s) are masked from 'package:Biobase':

    combine

** help
No man pages found in package  'a4' 
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'a4vignette.Rnw' 
** testing if installed package can be loaded

mpm version 1.0-17

Loaded glmnet 1.7 

a4Base version 1.1.3


add DLL for x64

* installing *source* package 'a4' ...
** testing if installed package can be loaded

mpm version 1.0-17

Loaded glmnet 1.7 

a4Base version 1.1.3

* MD5 sums
packaged installation of 'a4' as a4_1.1.2.zip

* DONE (a4)