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Package 257/479HostnameOS / ArchBUILDCHECKBUILD BIN
KEGGSOAP 1.27.0
Biocore Team c/o BioC user list
Snapshot Date: 2011-07-06 19:21:50 -0700 (Wed, 06 Jul 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/KEGGSOAP
Last Changed Rev: 54802 / Revision: 56603
Last Changed Date: 2011-04-13 15:36:43 -0700 (Wed, 13 Apr 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise (64-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: KEGGSOAP
Version: 1.27.0
Command: mkdir KEGGSOAP.buildbin-libdir && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=KEGGSOAP.buildbin-libdir KEGGSOAP_1.27.0.tar.gz >KEGGSOAP-install.out 2>&1 && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --library=KEGGSOAP.buildbin-libdir --install="check:KEGGSOAP-install.out" --force-multiarch --no-vignettes --timings KEGGSOAP_1.27.0.tar.gz && mv KEGGSOAP.buildbin-libdir/* KEGGSOAP.Rcheck/ && rmdir KEGGSOAP.buildbin-libdir
StartedAt: 2011-07-07 05:28:30 -0700 (Thu, 07 Jul 2011)
EndedAt: 2011-07-07 05:31:10 -0700 (Thu, 07 Jul 2011)
EllapsedTime: 160.1 seconds
RetCode: 0
Status:  OK  
CheckDir: KEGGSOAP.Rcheck
Warnings: 0

Command output

* using log directory 'D:/biocbld/bbs-2.9-bioc/meat/KEGGSOAP.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-06-20 r56188)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'KEGGSOAP/DESCRIPTION' ... OK
* this is package 'KEGGSOAP' version '1.27.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'KEGGSOAP' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the name space can be loaded with stated dependencies ... OK
** checking whether the name space can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the name space can be loaded with stated dependencies ... OK
** checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking PDF version of manual ... OK

KEGGSOAP.Rcheck/00install.out:


install for i386

* installing *source* package 'KEGGSOAP' ...
** R
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

add DLL for x64

* installing *source* package 'KEGGSOAP' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'KEGGSOAP' as KEGGSOAP_1.27.0.zip

* DONE (KEGGSOAP)

KEGGSOAP.Rcheck/KEGGSOAP-Ex.timings:

nameusersystemelapsed
bconv0.270.032.01
bget0.030.002.57
get.genes.by.motifs0.060.002.39
get.genes.by.organism0.010.000.76
get.genes.by.pathway0.110.003.29
get.ko.by.gene0.210.005.43
get.motifs.by.gene0.010.011.47
get.paralogs.by.gene0.050.001.95
get.pathways.by.genes0.060.003.17
getBestNeighbors0.080.003.60
list.organisms1.930.038.17
mark.pathway.by.objects0.030.005.59
search.compounds.by.name0.130.006.22
search.glycans.by.name0.220.006.51