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Package 240/479HostnameOS / ArchBUILDCHECKBUILD BIN
IdMappingRetrieval 0.99.1
Alex Lisovich , Roger Day
Snapshot Date: 2011-07-06 19:21:50 -0700 (Wed, 06 Jul 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/IdMappingRetrieval
Last Changed Rev: 56498 / Revision: 56603
Last Changed Date: 2011-07-01 11:30:04 -0700 (Fri, 01 Jul 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK [ OK ] OK 
moscato1 Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  ERROR  ERROR 
pitt Mac OS X Leopard (10.5.8) / i386  ERROR  skipped  skipped 

Summary

Package: IdMappingRetrieval
Version: 0.99.1
Command: D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --no-vignettes --timings --no-multiarch IdMappingRetrieval_0.99.1.tar.gz
StartedAt: 2011-07-07 04:43:19 -0700 (Thu, 07 Jul 2011)
EndedAt: 2011-07-07 04:46:00 -0700 (Thu, 07 Jul 2011)
EllapsedTime: 161.7 seconds
RetCode: 0
Status:  OK  
CheckDir: IdMappingRetrieval.Rcheck
Warnings: 0

Command output

* using log directory 'D:/biocbld/bbs-2.9-bioc/meat/IdMappingRetrieval.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-06-03 r56036)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'IdMappingRetrieval/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'IdMappingRetrieval' version '0.99.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'IdMappingRetrieval' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

IdMappingRetrieval.Rcheck/00install.out:

* installing *source* package 'IdMappingRetrieval' ...
** R
** demo
** inst
** preparing package for lazy loading
Loading required package: R.methodsS3
R.methodsS3 v1.2.1 (2010-09-18) successfully loaded. See ?R.methodsS3 for help.
R.oo v1.8.0 (2011-04-03) successfully loaded. See ?R.oo for help.
Loading required package: bitops
Loading required package: rJava

Attaching package: 'rJava'

The following object(s) are masked from 'package:R.oo':

    clone

This is  rChoiceDialogs   1.0.1   2011-01-14 
This is  ENVISIONQuery   1.1.2   2011-04-19 
Warning in setGenericS3.default(name, envir = envir, validators = validators) :
  Renamed the preexisting function getServices to getServices.default, which was defined in environment ENVISIONQuery.
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'IdMappingRetrieval.Rnw' using 'latin-9' 
** testing if installed package can be loaded
This is  rChoiceDialogs   1.0.1   2011-01-14 
This is  ENVISIONQuery   1.1.2   2011-04-19 
This is  IdMappingRetrieval   0.99.1   2011-06-30 

* DONE (IdMappingRetrieval)

IdMappingRetrieval.Rcheck/IdMappingRetrieval-Ex.timings:

nameusersystemelapsed
AnnotationDavid000
AnnotationEnsembl000
AnnotationEnsemblCsv000
AnnotationEnvision000
addServices.ServiceManager0.040.000.05
createSubmission.AnnotationNetAffx000
getArrayType.Annotation000
getArrayTypes.Annotation000
getCredentials.Annotation000
getDataFrame.Annotation000
getDataFrameList.ServiceManager000
getDefaultServices.ServiceManager0.020.000.01
getIdMap.Annotation000
getIdMapList.ServiceManager000
getProbesetList.AnnotationAffx000
getRoot.Annotation000
getServiceRoot.Annotation000
getServices.ServiceManager0.020.000.02
init.Annotation000
setCredentials.Annotation000
setCredentials.AnnotationAffx000
setOptions.Annotation000
setServices.ServiceManager0.010.000.01
subsetByColumn000