Package: GraphAT

Version: 1.25.0

Command: mkdir GraphAT.buildbin-libdir && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=GraphAT.buildbin-libdir GraphAT_1.25.0.tar.gz >GraphAT-install.out 2>&1 && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --library=GraphAT.buildbin-libdir --install="check:GraphAT-install.out" --force-multiarch --no-vignettes --timings GraphAT_1.25.0.tar.gz && mv GraphAT.buildbin-libdir/* GraphAT.Rcheck/ && rmdir GraphAT.buildbin-libdir

StartedAt: 2011-07-07 05:17:42 -0700 (Thu, 07 Jul 2011)

EndedAt: 2011-07-07 05:21:45 -0700 (Thu, 07 Jul 2011)

EllapsedTime: 242.7 seconds

RetCode: 0

Status:  OK

CheckDir: GraphAT.Rcheck

Warnings: 0

* using log directory 'D:/biocbld/bbs-2.9-bioc/meat/GraphAT.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-06-20 r56188)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'GraphAT/DESCRIPTION' ... OK
* this is package 'GraphAT' version '1.25.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'GraphAT' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  7.2Mb
  sub-directories of 1Mb or more:
    data   7.1Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the name space can be loaded with stated dependencies ... OK
** checking whether the name space can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the name space can be loaded with stated dependencies ... OK
** checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: depthmat.Rd:28: Dropping empty section \references
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... NOTE
  
  Note: significantly better compression could be obtained
        by using tools::resaveRdaFiles() or R CMD build --resave-data
                    old_size new_size compress
  Phenoclusters.rda     26Kb      8Kb       xz
  causton.rda          622Kb    423Kb       xz
  ccCM.rda             108Kb     18Kb    bzip2
  depthmatBP.rda       2.5Mb    396Kb       xz
  depthmatCC.rda       1.6Mb    138Kb       xz
  depthmatMF.rda       1.4Mb    217Kb       xz
  giaever.rda          882Kb    700Kb       xz
  mRNAclusters.rda      26Kb      8Kb       xz
  nNamescc.rda          15Kb      6Kb       xz
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking PDF version of manual ... OK

install for i386

* installing *source* package 'GraphAT' ...
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

add DLL for x64

* installing *source* package 'GraphAT' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GraphAT' as GraphAT_1.25.0.zip

* DONE (GraphAT)

name	user	system	elapsed
Phenoclusters	1.08	0.08	1.16
causton	0.56	0.03	0.59
cellcycle	1.12	0.00	1.12
clust2Mat	0	0	0
depthmat	1.36	0.02	1.37
getpvalue	0	0	0
giaever	0.59	0.00	0.59
mRNAclusters	0.69	0.21	0.91
makeClustM	0	0	0
mat2UndirG	0.01	0.00	0.01
permPower	0.92	0.02	0.94
perms	0	0	0