GenomicRanges 1.5.16
Biocore Team c/o BioC user list
| Snapshot Date: 2011-07-06 19:21:50 -0700 (Wed, 06 Jul 2011) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/GenomicRanges | | Last Changed Rev: 56570 / Revision: 56603 | | Last Changed Date: 2011-07-05 14:16:40 -0700 (Tue, 05 Jul 2011) |
| wilson2 | Linux (openSUSE 11.4) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| gewurz | Windows Server 2008 R2 Enterprise (64-bit) / x64 | OK | OK | OK |
| moscato1 | Windows Server 2008 R2 Enterprise (64-bit) / x64 | OK | OK | [ OK ] |
| pitt | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
install for i386
* installing *source* package 'GenomicRanges' ...
** libs
gcc -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/IRanges/include" -O3 -Wall -std=gnu99 -mtune=core2 -c IRanges_stubs.c -o IRanges_stubs.o
gcc -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/IRanges/include" -O3 -Wall -std=gnu99 -mtune=core2 -c R_init_GenomicRanges.c -o R_init_GenomicRanges.o
gcc -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/IRanges/include" -O3 -Wall -std=gnu99 -mtune=core2 -c cigar_utils.c -o cigar_utils.o
cigar_utils.c: In function 'cigar_to_width':
cigar_utils.c:841:23: warning: 'width' may be used uninitialized in this function
cigar_utils.c: In function 'cigar_qnarrow':
cigar_utils.c:311:17: warning: 'OPL' may be used uninitialized in this function
cigar_utils.c:311:17: note: 'OPL' was declared here
cigar_utils.c:312:7: warning: 'OP' may be used uninitialized in this function
cigar_utils.c:312:7: note: 'OP' was declared here
cigar_utils.c: In function 'cigar_narrow':
cigar_utils.c:471:17: warning: 'OPL' may be used uninitialized in this function
cigar_utils.c:471:17: note: 'OPL' was declared here
cigar_utils.c:472:7: warning: 'OP' may be used uninitialized in this function
cigar_utils.c:472:7: note: 'OP' was declared here
cigar_utils.c: In function 'ref_locs_to_query_locs':
cigar_utils.c:1168:9: warning: 'n' may be used uninitialized in this function
gcc -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/IRanges/include" -O3 -Wall -std=gnu99 -mtune=core2 -c transcript_utils.c -o transcript_utils.o
transcript_utils.c: In function 'tlocs2rlocs':
transcript_utils.c:207:44: warning: 'nlocs' may be used uninitialized in this function
gcc -shared -s -static-libgcc -o GenomicRanges.dll tmp.def IRanges_stubs.o R_init_GenomicRanges.o cigar_utils.o transcript_utils.o -LD:/biocbld/BBS-2˜1.9-B/R/bin/i386 -lR
installing to D:/biocbld/bbs-2.9-bioc/meat/GenomicRanges.buildbin-libdir/GenomicRanges/libs/i386
** R
** inst
** preparing package for lazy loading
Attaching package: 'IRanges'
The following object(s) are masked from 'package:base':
Map, cbind, eval, intersect, mapply, order, paste, pmax, pmax.int,
pmin, pmin.int, rbind, rep.int, setdiff, table, union
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
'GenomicRangesIntroduction.Rnw'
'GenomicRangesUseCases.Rnw'
'countGenomicOverlaps.Rnw'
** testing if installed package can be loaded
add DLL for x64
* installing *source* package 'GenomicRanges' ...
** libs
x86_64-w64-mingw32-gcc -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/IRanges/include" -O2 -Wall -std=gnu99 -mtune=core2 -c IRanges_stubs.c -o IRanges_stubs.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/IRanges/include" -O2 -Wall -std=gnu99 -mtune=core2 -c R_init_GenomicRanges.c -o R_init_GenomicRanges.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/IRanges/include" -O2 -Wall -std=gnu99 -mtune=core2 -c cigar_utils.c -o cigar_utils.o
cigar_utils.c: In function 'cigar_to_width':
cigar_utils.c:841:23: warning: 'width' may be used uninitialized in this function
cigar_utils.c: In function 'ref_locs_to_query_locs':
cigar_utils.c:1168:9: warning: 'n' may be used uninitialized in this function
x86_64-w64-mingw32-gcc -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/IRanges/include" -O2 -Wall -std=gnu99 -mtune=core2 -c transcript_utils.c -o transcript_utils.o
transcript_utils.c: In function 'tlocs2rlocs':
transcript_utils.c:207:44: warning: 'nlocs' may be used uninitialized in this function
x86_64-w64-mingw32-gcc -shared -s -static-libgcc -o GenomicRanges.dll tmp.def IRanges_stubs.o R_init_GenomicRanges.o cigar_utils.o transcript_utils.o -LD:/biocbld/BBS-2˜1.9-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-2.9-bioc/meat/GenomicRanges.buildbin-libdir/GenomicRanges/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GenomicRanges' as GenomicRanges_1.5.16.zip
* DONE (GenomicRanges)