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Package 189/479HostnameOS / ArchBUILDCHECKBUILD BIN
GeneticsPed 1.15.0
David Henderson
Snapshot Date: 2011-07-06 19:21:50 -0700 (Wed, 06 Jul 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/GeneticsPed
Last Changed Rev: 54802 / Revision: 56603
Last Changed Date: 2011-04-13 15:36:43 -0700 (Wed, 13 Apr 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  WARNINGS [ OK ]
moscato1 Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: GeneticsPed
Version: 1.15.0
Command: mkdir GeneticsPed.buildbin-libdir && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD INSTALL --build --no-multiarch --library=GeneticsPed.buildbin-libdir GeneticsPed_1.15.0.tar.gz
StartedAt: 2011-07-07 07:00:14 -0700 (Thu, 07 Jul 2011)
EndedAt: 2011-07-07 07:00:27 -0700 (Thu, 07 Jul 2011)
EllapsedTime: 13.5 seconds
RetCode: 0
Status:  OK  
PackageFile: GeneticsPed_1.15.0.zip
PackageFileSize: 762.2 KiB

Command output

* installing *source* package 'GeneticsPed' ...
** libs
x86_64-w64-mingw32-g++  -I"D:/biocbld/bbs-2.9-bioc/R/include"          -O2 -Wall  -c ainverse.cc -o ainverse.o
x86_64-w64-mingw32-g++  -I"D:/biocbld/bbs-2.9-bioc/R/include"          -O2 -Wall  -c eibd.cc -o eibd.o
x86_64-w64-mingw32-gfortran      -O2  -c ggmatmult.f -o ggmatmult.o
x86_64-w64-mingw32-gfortran      -O2  -c gpi.f -o gpi.o
x86_64-w64-mingw32-g++  -I"D:/biocbld/bbs-2.9-bioc/R/include"          -O2 -Wall  -c inbreed.cc -o inbreed.o
x86_64-w64-mingw32-g++  -I"D:/biocbld/bbs-2.9-bioc/R/include"          -O2 -Wall  -c inverseAdditive.cc -o inverseAdditive.o
x86_64-w64-mingw32-g++  -I"D:/biocbld/bbs-2.9-bioc/R/include"          -O2 -Wall  -c meuwissen.cc -o meuwissen.o
x86_64-w64-mingw32-g++  -I"D:/biocbld/bbs-2.9-bioc/R/include"          -O2 -Wall  -c pedSort.cc -o pedSort.o
x86_64-w64-mingw32-g++  -I"D:/biocbld/bbs-2.9-bioc/R/include"          -O2 -Wall  -c pedtemplate.cc -o pedtemplate.o
x86_64-w64-mingw32-g++  -I"D:/biocbld/bbs-2.9-bioc/R/include"          -O2 -Wall  -c register.cc -o register.o
x86_64-w64-mingw32-gcc  -I"D:/biocbld/bbs-2.9-bioc/R/include"          -O2 -Wall  -std=gnu99 -c sargolzaei.c -o sargolzaei.o
x86_64-w64-mingw32-g++  -I"D:/biocbld/bbs-2.9-bioc/R/include"          -O2 -Wall  -c sortped.cc -o sortped.o
x86_64-w64-mingw32-g++ -shared -s -static-libgcc -o GeneticsPed.dll tmp.def ainverse.o eibd.o ggmatmult.o gpi.o inbreed.o inverseAdditive.o meuwissen.o pedSort.o pedtemplate.o register.o sargolzaei.o sortped.o -lgfortran -LD:/biocbld/bbs-2.9-bioc/R/bin/x64 -lR
installing to D:/biocbld/bbs-2.9-bioc/meat/GeneticsPed.buildbin-libdir/GeneticsPed/libs/x64
** R
** data
** inst
** preparing package for lazy loading
File type 'perl' not found or no open command associated with it.
Warning: running command 'C:\Windows\system32\cmd.exe /c ftype perl' had status 2
File type 'perl' not found or no open command associated with it.
Warning: running command 'C:\Windows\system32\cmd.exe /c ftype perl' had status 2
gdata: read.xls support for 'XLS' (Excel 97-2004) files ENABLED.

gdata: Unable to load perl libaries needed by read.xls()
gdata: to support 'XLSX' (Excel 2007+) files.

gdata: Run the function 'installXLSXsupport()'
gdata: to automatically download and install the perl
gdata: libaries needed to support Excel XLS and XLSX formats.

Attaching package: 'gdata'

The following object(s) are masked from 'package:stats':

    nobs

The following object(s) are masked from 'package:utils':

    object.size

Loading required package: combinat

Attaching package: 'combinat'

The following object(s) are masked from 'package:utils':

    combn

Loading required package: gtools
Loading required package: MASS
Loading required package: mvtnorm

NOTE: THIS PACKAGE IS NOW OBSOLETE.

  The R-Genetics project has developed an set of enhanced genetics
  packages to replace 'genetics'. Please visit the project homepage
  at http://rgenetics.org for informtion.


Attaching package: 'genetics'

The following object(s) are masked from 'package:base':

    %in%, as.factor, order

** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'geneticRelatedness.Rnw' 
   'pedigreeHandling.Rnw' 
   'quanGenAnimalModel.Rnw' 
** testing if installed package can be loaded
File type 'perl' not found or no open command associated with it.
File type 'perl' not found or no open command associated with it.

NOTE: THIS PACKAGE IS NOW OBSOLETE.

  The R-Genetics project has developed an set of enhanced genetics
  packages to replace 'genetics'. Please visit the project homepage
  at http://rgenetics.org for informtion.

Warning messages:
1: running command 'C:\Windows\system32\cmd.exe /c ftype perl' had status 2 
2: running command 'C:\Windows\system32\cmd.exe /c ftype perl' had status 2 
* MD5 sums
packaged installation of 'GeneticsPed' as GeneticsPed_1.15.0.zip

* DONE (GeneticsPed)