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Package 210/479HostnameOS / ArchBUILDCHECKBUILD BIN
GOSemSim 1.11.4
Guangchuang Yu
Snapshot Date: 2011-07-06 19:21:50 -0700 (Wed, 06 Jul 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/GOSemSim
Last Changed Rev: 56374 / Revision: 56603
Last Changed Date: 2011-06-23 04:45:22 -0700 (Thu, 23 Jun 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise (64-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: GOSemSim
Version: 1.11.4
Command: mkdir GOSemSim.buildbin-libdir && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=GOSemSim.buildbin-libdir GOSemSim_1.11.4.tar.gz >GOSemSim-install.out 2>&1 && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --library=GOSemSim.buildbin-libdir --install="check:GOSemSim-install.out" --force-multiarch --no-vignettes --timings GOSemSim_1.11.4.tar.gz && mv GOSemSim.buildbin-libdir/* GOSemSim.Rcheck/ && rmdir GOSemSim.buildbin-libdir
StartedAt: 2011-07-07 05:13:27 -0700 (Thu, 07 Jul 2011)
EndedAt: 2011-07-07 05:17:53 -0700 (Thu, 07 Jul 2011)
EllapsedTime: 266.5 seconds
RetCode: 0
Status:  OK  
CheckDir: GOSemSim.Rcheck
Warnings: 0

Command output

* using log directory 'D:/biocbld/bbs-2.9-bioc/meat/GOSemSim.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-06-20 r56188)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'GOSemSim/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'GOSemSim' version '1.11.4'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'GOSemSim' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the name space can be loaded with stated dependencies ... OK
** checking whether the name space can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the name space can be loaded with stated dependencies ... OK
** checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... NOTE
  
  Note: significantly better compression could be obtained
        by using tools::resaveRdaFiles() or R CMD build --resave-data
                                   old_size new_size compress
  Info_Contents_anopheles_BP.rda       70Kb     20Kb       xz
  Info_Contents_anopheles_CC.rda       11Kb      9Kb    bzip2
  Info_Contents_anopheles_MF.rda       30Kb      9Kb       xz
  Info_Contents_arabidopsis_BP.rda     68Kb     19Kb       xz
  Info_Contents_arabidopsis_CC.rda     11Kb      9Kb    bzip2
  Info_Contents_arabidopsis_MF.rda     31Kb     10Kb       xz
  Info_Contents_bovine_BP.rda          71Kb     21Kb       xz
  Info_Contents_bovine_CC.rda          11Kb      9Kb    bzip2
  Info_Contents_bovine_MF.rda          31Kb     10Kb       xz
  Info_Contents_canine_BP.rda          77Kb     25Kb       xz
  Info_Contents_canine_CC.rda          12Kb      5Kb       xz
  Info_Contents_canine_MF.rda          32Kb     11Kb       xz
  Info_Contents_chicken_BP.rda         70Kb     20Kb       xz
  Info_Contents_chicken_CC.rda         11Kb      9Kb    bzip2
  Info_Contents_chicken_MF.rda         30Kb      9Kb       xz
  Info_Contents_chimp_BP.rda           77Kb     25Kb       xz
  Info_Contents_chimp_CC.rda           12Kb      5Kb       xz
  Info_Contents_chimp_MF.rda           32Kb     11Kb       xz
  Info_Contents_coelicolor_BP.rda      59Kb     13Kb       xz
  Info_Contents_coelicolor_MF.rda      28Kb      8Kb       xz
  Info_Contents_ecolik12_BP.rda        57Kb     11Kb       xz
  Info_Contents_ecolik12_MF.rda        25Kb      6Kb       xz
  Info_Contents_ecsakai_BP.rda         54Kb      9Kb       xz
  Info_Contents_ecsakai_MF.rda         24Kb      5Kb       xz
  Info_Contents_fly_BP.rda             68Kb     19Kb       xz
  Info_Contents_fly_CC.rda             11Kb      9Kb    bzip2
  Info_Contents_fly_MF.rda             31Kb     10Kb       xz
  Info_Contents_human_BP.rda           77Kb     25Kb       xz
  Info_Contents_human_CC.rda           12Kb      6Kb       xz
  Info_Contents_human_MF.rda           33Kb     11Kb       xz
  Info_Contents_malaria_BP.rda         60Kb     13Kb       xz
  Info_Contents_malaria_MF.rda         28Kb      8Kb       xz
  Info_Contents_mouse_BP.rda           77Kb     25Kb       xz
  Info_Contents_mouse_CC.rda           12Kb      5Kb       xz
  Info_Contents_mouse_MF.rda           33Kb     11Kb       xz
  Info_Contents_pig_BP.rda             74Kb     22Kb       xz
  Info_Contents_pig_CC.rda             11Kb      5Kb       xz
  Info_Contents_pig_MF.rda             31Kb     10Kb       xz
  Info_Contents_rat_BP.rda             78Kb     26Kb       xz
  Info_Contents_rat_CC.rda             12Kb      6Kb       xz
  Info_Contents_rat_MF.rda             33Kb     11Kb       xz
  Info_Contents_rhesus_BP.rda          76Kb     25Kb       xz
  Info_Contents_rhesus_CC.rda          12Kb      5Kb       xz
  Info_Contents_rhesus_MF.rda          32Kb     11Kb       xz
  Info_Contents_worm_BP.rda            64Kb     16Kb       xz
  Info_Contents_worm_CC.rda            10Kb      8Kb    bzip2
  Info_Contents_worm_MF.rda            29Kb      9Kb       xz
  Info_Contents_xenopus_BP.rda         75Kb     24Kb       xz
  Info_Contents_xenopus_CC.rda         12Kb      5Kb       xz
  Info_Contents_xenopus_MF.rda         32Kb     10Kb       xz
  Info_Contents_yeast_BP.rda           66Kb     17Kb       xz
  Info_Contents_yeast_CC.rda           11Kb      5Kb       xz
  Info_Contents_yeast_MF.rda           30Kb      9Kb       xz
  Info_Contents_zebrafish_BP.rda       65Kb     17Kb       xz
  Info_Contents_zebrafish_CC.rda       10Kb      8Kb    bzip2
  Info_Contents_zebrafish_MF.rda       30Kb      9Kb       xz
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

GOSemSim.Rcheck/00install.out:


install for i386

* installing *source* package 'GOSemSim' ...
** R
** data
** inst
** preparing package for lazy loading
Loading Tcl/Tk interface ... done
Loading required package: DBI




















** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'GOSemSim.Rnw' 
** testing if installed package can be loaded

add DLL for x64

* installing *source* package 'GOSemSim' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GOSemSim' as GOSemSim_1.11.4.zip

* DONE (GOSemSim)

GOSemSim.Rcheck/GOSemSim-Ex.timings:

nameusersystemelapsed
GOSet-class0.480.030.51
GOSet-methods000
GeneClusterSet-class0.020.000.02
GeneSet-class000
Params-class000
Params-methods0.010.000.01
clusterSim13.92 0.1114.04
geneSim8.720.028.74
goSim0.170.000.17
mclusterSim9.360.099.50
mgeneSim8.890.089.02
mgoSim0.190.000.18