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Package 145/479HostnameOS / ArchBUILDCHECKBUILD BIN
ExpressionView 1.5.0
Gabor Csardi
Snapshot Date: 2011-07-06 19:21:50 -0700 (Wed, 06 Jul 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ExpressionView
Last Changed Rev: 56066 / Revision: 56603
Last Changed Date: 2011-06-08 15:07:12 -0700 (Wed, 08 Jun 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  WARNINGS 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ WARNINGS ] OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  WARNINGS  OK 
moscato1 Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  WARNINGS  OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK  WARNINGS  OK 

Summary

Package: ExpressionView
Version: 1.5.0
Command: E:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --no-vignettes --timings --no-multiarch ExpressionView_1.5.0.tar.gz
StartedAt: 2011-07-07 01:38:15 -0700 (Thu, 07 Jul 2011)
EndedAt: 2011-07-07 01:40:24 -0700 (Thu, 07 Jul 2011)
EllapsedTime: 129.5 seconds
RetCode: 0
Status:  WARNINGS  
CheckDir: ExpressionView.Rcheck
Warnings: 1

Command output

* using log directory 'E:/biocbld/bbs-2.9-bioc/meat/ExpressionView.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-06-03 r56036)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ExpressionView/DESCRIPTION' ... OK
* this is package 'ExpressionView' version '1.5.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'ExpressionView' can be installed ... WARNING
Found the following significant warnings:
  Warning: value of 'results' option should be lowercase
See 'E:/biocbld/bbs-2.9-bioc/meat/ExpressionView.Rcheck/00install.out' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning, see
  'E:/biocbld/bbs-2.9-bioc/meat/ExpressionView.Rcheck/00check.log'
for details

ExpressionView.Rcheck/00install.out:

* installing *source* package 'ExpressionView' ...
** libs
g++  -I"E:/biocbld/BBS-2˜1.9-B/R/include"          -O2 -Wall  -c order.cpp -o order.o
g++  -I"E:/biocbld/BBS-2˜1.9-B/R/include"          -O2 -Wall  -c orderclusters.cpp -o orderclusters.o
g++ -shared -s -static-libgcc -o ExpressionView.dll tmp.def order.o orderclusters.o -LE:/biocbld/BBS-2˜1.9-B/R/bin/i386 -lR
installing to E:/biocbld/bbs-2.9-bioc/meat/ExpressionView.Rcheck/ExpressionView/libs/i386
** R
** inst
** preparing package for lazy loading
Loading required package: bitops
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

Loading required package: DBI


in method for 'ExportEV' with signature 'biclusters="Biclust"': no definition for class "Biclust"
Loading required package: eisa
Loading required package: isa2
Loading required package: AnnotationDbi
Loading required package: Category
Loading required package: genefilter
Loading required package: biclust
Loading required package: MASS

Attaching package: 'MASS'

The following object(s) are masked from 'package:genefilter':

    area

Loading required package: grid
Loading required package: colorspace
Loading required package: lattice
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'ExpressionView.format.Rnw' 
   'ExpressionView.ordering.Rnw' 
   'ExpressionView.tutorial.Rnw' 
Warning: value of 'results' option should be lowercase
** testing if installed package can be loaded

* DONE (ExpressionView)

ExpressionView.Rcheck/ExpressionView-Ex.timings:

nameusersystemelapsed
ExportEV17.25 0.1717.97
LaunchEV000
OrderEV6.810.006.87