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Package 115/479HostnameOS / ArchBUILDCHECKBUILD BIN
CRImage 1.3.0
Henrik Failmezger , Yinyin Yuan
Snapshot Date: 2011-07-06 19:21:50 -0700 (Wed, 06 Jul 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/CRImage
Last Changed Rev: 54810 / Revision: 56603
Last Changed Date: 2011-04-13 18:14:51 -0700 (Wed, 13 Apr 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  ERROR  skipped  skipped 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64 N O T   S U P P O R T E D
moscato1 Windows Server 2008 R2 Enterprise (64-bit) / x64  ERROR  skipped  skipped 
pitt Mac OS X Leopard (10.5.8) / i386 N O T   S U P P O R T E D

Summary

Package: CRImage
Version: 1.3.0
Command: /home/biocbuild/bbs-2.9-bioc/R/bin/R CMD check --no-vignettes --timings CRImage_1.3.0.tar.gz
StartedAt: 2011-07-07 00:13:33 -0700 (Thu, 07 Jul 2011)
EndedAt: 2011-07-07 00:15:56 -0700 (Thu, 07 Jul 2011)
EllapsedTime: 142.8 seconds
RetCode: 0
Status:  OK 
CheckDir: CRImage.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.9-bioc/meat/CRImage.Rcheck’
* using R version 2.14.0 Under development (unstable) (2011-06-15 r56138)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘CRImage/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘CRImage’ version ‘1.3.0’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘CRImage’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 11.0Mb
  sub-directories of 1Mb or more:
    extdata   8.6Mb
    doc       2.2Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

CRImage.Rcheck/00install.out:

* installing *source* package ‘CRImage’ ...
** R
** inst
** preparing package for lazy loading
Loading required package: abind
Xlib:  extension "RANDR" missing on display ":32133.0".
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   ‘CRImage.Rnw’ 
** testing if installed package can be loaded
Xlib:  extension "RANDR" missing on display ":32133.0".

* DONE (CRImage)

CRImage.Rcheck/CRImage-Ex.timings:

nameusersystemelapsed
CRImage-package10.076 0.38810.569
calculateCellularity10.333 0.35610.491
calculateThreshold2.1920.1642.214
classificationAperio1.2440.0001.247
classifyCells10.177 0.22410.346
createClassifier0.9120.0080.925
createTrainingSet9.6880.3369.301
determineCellularity9.6170.1849.510
findSlices0.920.000.92
kernelSmoother8.9010.2048.947
localThreshold7.8280.1047.732
numberOfNeighbors7.8690.1967.856
paintCells9.2200.1769.190
parseFinalScan0.9240.0040.934
processAperio1.0000.0041.007
segmentCytoplasma7.9650.1327.860
segmentImage7.7760.3008.020