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Package 79/479HostnameOS / ArchBUILDCHECKBUILD BIN
CGEN 1.5.0
William Wheeler
Snapshot Date: 2011-07-06 19:21:50 -0700 (Wed, 06 Jul 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/CGEN
Last Changed Rev: 54802 / Revision: 56603
Last Changed Date: 2011-04-13 15:36:43 -0700 (Wed, 13 Apr 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK [ OK ]
pitt Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: CGEN
Version: 1.5.0
Command: mkdir CGEN.buildbin-libdir && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=CGEN.buildbin-libdir CGEN_1.5.0.tar.gz
StartedAt: 2011-07-07 06:50:48 -0700 (Thu, 07 Jul 2011)
EndedAt: 2011-07-07 06:51:24 -0700 (Thu, 07 Jul 2011)
EllapsedTime: 35.2 seconds
RetCode: 0
Status:  OK  
PackageFile: CGEN_1.5.0.zip
PackageFileSize: 685.5 KiB

Command output


install for i386

* installing *source* package 'CGEN' ...
** libs
gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"          -O3 -Wall  -std=gnu99 -mtune=core2 -c CML.c -o CML.o
gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"          -O3 -Wall  -std=gnu99 -mtune=core2 -c ccl.c -o ccl.o
ccl.c:386:13: warning: 'tree_print' defined but not used
gfortran      -O3  -mtune=core2 -c csclust.f -o csclust.o
gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"          -O3 -Wall  -std=gnu99 -mtune=core2 -c fsclust.c -o fsclust.o
gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"          -O3 -Wall  -std=gnu99 -mtune=core2 -c hcl.c -o hcl.o
hcl.c:375:13: warning: 'tree_print' defined but not used
gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"          -O3 -Wall  -std=gnu99 -mtune=core2 -c pmatch.c -o pmatch.o
gcc -shared -s -static-libgcc -o CGEN.dll tmp.def CML.o ccl.o csclust.o fsclust.o hcl.o pmatch.o -lgfortran -LD:/biocbld/BBS-2˜1.9-B/R/bin/i386 -lR
installing to D:/biocbld/bbs-2.9-bioc/meat/CGEN.buildbin-libdir/CGEN/libs/i386
** R
** data
** exec
** inst
** preparing package for lazy loading
Loading required package: splines
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'vignette.Rnw' 
** testing if installed package can be loaded

add DLL for x64

* installing *source* package 'CGEN' ...
** libs
x86_64-w64-mingw32-gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"          -O2 -Wall  -std=gnu99 -mtune=core2 -c CML.c -o CML.o
x86_64-w64-mingw32-gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"          -O2 -Wall  -std=gnu99 -mtune=core2 -c ccl.c -o ccl.o
ccl.c:386:13: warning: 'tree_print' defined but not used
x86_64-w64-mingw32-gfortran      -O2  -mtune=core2 -c csclust.f -o csclust.o
x86_64-w64-mingw32-gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"          -O2 -Wall  -std=gnu99 -mtune=core2 -c fsclust.c -o fsclust.o
x86_64-w64-mingw32-gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"          -O2 -Wall  -std=gnu99 -mtune=core2 -c hcl.c -o hcl.o
hcl.c:375:13: warning: 'tree_print' defined but not used
x86_64-w64-mingw32-gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"          -O2 -Wall  -std=gnu99 -mtune=core2 -c pmatch.c -o pmatch.o
x86_64-w64-mingw32-gcc -shared -s -static-libgcc -o CGEN.dll tmp.def CML.o ccl.o csclust.o fsclust.o hcl.o pmatch.o -lgfortran -LD:/biocbld/BBS-2˜1.9-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-2.9-bioc/meat/CGEN.buildbin-libdir/CGEN/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'CGEN' as CGEN_1.5.0.zip

* DONE (CGEN)