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Package 67/479HostnameOS / ArchBUILDCHECKBUILD BIN
BioSeqClass 1.11.0
Li Hong
Snapshot Date: 2011-07-06 19:21:50 -0700 (Wed, 06 Jul 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/BioSeqClass
Last Changed Rev: 56578 / Revision: 56603
Last Changed Date: 2011-07-05 17:51:53 -0700 (Tue, 05 Jul 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  ERROR  ERROR 
pitt Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: BioSeqClass
Version: 1.11.0
Command: /Library/Frameworks/R.framework/Versions/2.14/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch BioSeqClass_1.11.0.tar.gz
StartedAt: 2011-07-07 01:55:02 -0700 (Thu, 07 Jul 2011)
EndedAt: 2011-07-07 02:01:01 -0700 (Thu, 07 Jul 2011)
EllapsedTime: 359.1 seconds
RetCode: 0
Status:  OK 
CheckDir: BioSeqClass.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.9-bioc/meat/BioSeqClass.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-06-22 r56208)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'BioSeqClass/DESCRIPTION' ... OK
* this is package 'BioSeqClass' version '1.11.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'BioSeqClass' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  8.9Mb
  sub-directories of 1Mb or more:
    data      5.1Mb
    scripts   3.0Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: selectWeka.Rd:49-51: Dropping empty section \examples
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... NOTE
'library' or 'require' call not declared from: 'scatterplot3d'
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... NOTE
  
  Note: significantly better compression could be obtained
        by using tools::resaveRdaFiles() or R CMD build --resave-data
               old_size new_size compress
  DiProDB.rda      15Kb     12Kb       xz
  aa.index.rda    127Kb     71Kb    bzip2
  dssp.ss.rda     5.0Mb    2.8Mb       xz
* checking sizes of PDF files under 'inst/doc' ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

BioSeqClass.Rcheck/00install.out:

* installing *source* package 'BioSeqClass' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: rpart
Loading required package: MASS
Loading required package: mlbench
Loading required package: survival
Loading required package: splines
Loading required package: class
Loading required package: nnet
Loading required package: mvtnorm
Loading required package: modeltools
Loading required package: stats4
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'BioSeqClass.Rnw' 
** testing if installed package can be loaded

* DONE (BioSeqClass)

BioSeqClass.Rcheck/BioSeqClass-Ex.timings:

nameusersystemelapsed
basic1.2710.0251.397
classify13.199 0.77717.745
featureAAindex0.0010.0000.001
featureBDNAVIDEO0.0010.0000.000
featureBinary0.0010.0000.001
featureCKSAAP0.0000.0000.001
featureCTD0.0000.0000.001
featureDIPRODB000
featureDOMAIN0.0000.0000.001
featureEvaluate0.0280.0010.032
featureFragmentComposition0.0010.0000.001
featureGapPairComposition0.0000.0000.001
featureHydro0.0010.0010.001
featurePSSM0.0010.0000.001
featurePseudoAAComp0.0010.0010.001
featureSSC0.0020.0000.003
hr0.0040.0000.004
model2.5870.1722.930
performance2.9820.1223.503
selectFFS1.1840.0391.286