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Package 66/479HostnameOS / ArchBUILDCHECKBUILD BIN
BioNet 1.11.1
Marcus Dittrich
Snapshot Date: 2011-07-06 19:21:50 -0700 (Wed, 06 Jul 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/BioNet
Last Changed Rev: 56260 / Revision: 56603
Last Changed Date: 2011-06-16 18:18:20 -0700 (Thu, 16 Jun 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: BioNet
Version: 1.11.1
Command: /Library/Frameworks/R.framework/Versions/2.14/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch BioNet_1.11.1.tar.gz
StartedAt: 2011-07-07 01:54:47 -0700 (Thu, 07 Jul 2011)
EndedAt: 2011-07-07 01:58:39 -0700 (Thu, 07 Jul 2011)
EllapsedTime: 231.9 seconds
RetCode: 0
Status:  OK 
CheckDir: BioNet.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.9-bioc/meat/BioNet.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-06-22 r56208)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'BioNet/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'BioNet' version '1.11.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'BioNet' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

BioNet.Rcheck/00install.out:

* installing *source* package 'BioNet' ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'Tutorial.Rnw' 
** testing if installed package can be loaded

* DONE (BioNet)

BioNet.Rcheck/BioNet-Ex.timings:

nameusersystemelapsed
aggrPvals1.0390.0771.232
bumOptim1.1490.3401.761
compareNetworks2.4150.1362.833
fbum000
fbumLL1.3750.3531.746
fdrThreshold1.4950.3551.885
fitBumModel1.8300.3752.227
getCompScores3.5440.2043.811
getEdgeList1.4140.0471.472
hist.bum1.5720.3491.948
largestComp13.360 2.43015.984
largestScoreComp13.721 2.64816.584
loadNetwork.sif000
makeNetwork0.0140.0000.014
mapByVar000
permutateNodes16.723 2.72319.713
piUpper1.2380.4001.664
plot.bum2.0620.3802.473
plot3dModule5.2030.9256.198
plotLLSurface1.3580.2251.597
plotModule5.0880.9396.095
print.bum1.2710.3461.643
pvaluesExample0.0190.0020.021
readHeinzGraph0.5720.0080.592
readHeinzTree0.5720.0080.591
rmSelfLoops0.0120.0010.013
runFastHeinz13.810 1.48315.546
save3dModule3.7400.7744.577
saveNetwork2.3210.0872.443
scanFDR1.1990.3801.598
scoreFunction1.0950.4501.564
scoreNodes5.2250.9566.255
scoreOffset1.3930.3421.751
subNetwork0.0610.0020.064
summary.bum1.0390.3551.420
writeHeinz4.4800.7895.334
writeHeinzEdges 9.111 0.99210.265
writeHeinzNodes4.4850.7735.342