Package: BicARE

Version: 1.11.0

Command: mkdir BicARE.buildbin-libdir && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=BicARE.buildbin-libdir BicARE_1.11.0.tar.gz >BicARE-install.out 2>&1 && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --library=BicARE.buildbin-libdir --install="check:BicARE-install.out" --force-multiarch --no-vignettes --timings BicARE_1.11.0.tar.gz && mv BicARE.buildbin-libdir/* BicARE.Rcheck/ && rmdir BicARE.buildbin-libdir

StartedAt: 2011-07-07 04:17:21 -0700 (Thu, 07 Jul 2011)

EndedAt: 2011-07-07 04:39:03 -0700 (Thu, 07 Jul 2011)

EllapsedTime: 1301.7 seconds

RetCode: 0

Status:  OK

CheckDir: BicARE.Rcheck

Warnings: 0

* using log directory 'D:/biocbld/bbs-2.9-bioc/meat/BicARE.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-06-20 r56188)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'BicARE/DESCRIPTION' ... OK
* this is package 'BicARE' version '1.11.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'BicARE' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the name space can be loaded with stated dependencies ... OK
** checking whether the name space can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the name space can be loaded with stated dependencies ... OK
** checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

install for i386

* installing *source* package 'BicARE' ...
** libs
gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"          -O3 -Wall  -std=gnu99 -mtune=core2 -c BicARE.c -o BicARE.o
BicARE.c: In function 'floc':
BicARE.c:439:12: warning: unused variable 'invk'
BicARE.c: In function 'action':
BicARE.c:270:18: warning: 'i' may be used uninitialized in this function
BicARE.c:270:21: warning: 'j' may be used uninitialized in this function
gcc -shared -s -static-libgcc -o BicARE.dll tmp.def BicARE.o -LD:/biocbld/BBS-2˜1.9-B/R/bin/i386 -lR
installing to D:/biocbld/bbs-2.9-bioc/meat/BicARE.buildbin-libdir/BicARE/libs/i386
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: graph
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'BicARE.Rnw' 
** testing if installed package can be loaded

add DLL for x64

* installing *source* package 'BicARE' ...
** libs
x86_64-w64-mingw32-gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"          -O2 -Wall  -std=gnu99 -mtune=core2 -c BicARE.c -o BicARE.o
BicARE.c: In function 'floc':
BicARE.c:439:12: warning: unused variable 'invk'
BicARE.c: In function 'action':
BicARE.c:270:18: warning: 'i' may be used uninitialized in this function
BicARE.c:270:21: warning: 'j' may be used uninitialized in this function
x86_64-w64-mingw32-gcc -shared -s -static-libgcc -o BicARE.dll tmp.def BicARE.o -LD:/biocbld/BBS-2˜1.9-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-2.9-bioc/meat/BicARE.buildbin-libdir/BicARE/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BicARE' as BicARE_1.11.0.zip

* DONE (BicARE)

name	user	system	elapsed
FLOC	40.39	0.00	40.43
bicluster	0.42	0.00	0.42
makeReport	4.06	0.29	4.35
residue	0	0	0
testAnnot	0.04	0.00	0.03
testSet	551.13	0.35	552.74