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Package 43/479HostnameOS / ArchBUILDCHECKBUILD BIN
ArrayTools 1.13.0
Arthur Li
Snapshot Date: 2011-07-06 19:21:50 -0700 (Wed, 06 Jul 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ArrayTools
Last Changed Rev: 56090 / Revision: 56603
Last Changed Date: 2011-06-09 17:02:42 -0700 (Thu, 09 Jun 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise (64-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: ArrayTools
Version: 1.13.0
Command: mkdir ArrayTools.buildbin-libdir && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=ArrayTools.buildbin-libdir ArrayTools_1.13.0.tar.gz >ArrayTools-install.out 2>&1 && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --library=ArrayTools.buildbin-libdir --install="check:ArrayTools-install.out" --force-multiarch --no-vignettes --timings ArrayTools_1.13.0.tar.gz && mv ArrayTools.buildbin-libdir/* ArrayTools.Rcheck/ && rmdir ArrayTools.buildbin-libdir
StartedAt: 2011-07-07 04:08:32 -0700 (Thu, 07 Jul 2011)
EndedAt: 2011-07-07 04:10:23 -0700 (Thu, 07 Jul 2011)
EllapsedTime: 110.6 seconds
RetCode: 0
Status:  OK  
CheckDir: ArrayTools.Rcheck
Warnings: 0

Command output

* using log directory 'D:/biocbld/bbs-2.9-bioc/meat/ArrayTools.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-06-20 r56188)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ArrayTools/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'ArrayTools' version '1.13.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'ArrayTools' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the name space can be loaded with stated dependencies ... OK
** checking whether the name space can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the name space can be loaded with stated dependencies ... OK
** checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
preProcessGeneST: no visible binding for global variable
  'hugene10stCONTROL'
preProcessGeneST: no visible binding for global variable
  'mogene10stCONTROL'
regress: no visible global function definition for 'permute.1'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

ArrayTools.Rcheck/00install.out:


install for i386

* installing *source* package 'ArrayTools' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

Creating a generic function for "summary" from package "base" in package "ArrayTools"
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'ArrayTools.Rnw' 
** testing if installed package can be loaded

add DLL for x64

* installing *source* package 'ArrayTools' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ArrayTools' as ArrayTools_1.13.0.zip

* DONE (ArrayTools)

ArrayTools.Rcheck/ArrayTools-Ex.timings:

nameusersystemelapsed
Output2HTML0.180.000.17
QC000
Sort0.100.000.11
contrastMatrix-class0.050.000.05
createExpressionSet0.110.000.11
createGSEAFiles0.020.000.01
createIndex0.420.000.42
createIngenuityFile0.090.000.10
designMatrix-class0.030.000.03
eSetExample000
exprsExample0.020.000.01
geneFilter0.930.000.94
interactionResult-class0.350.000.34
pDataExample000
postInteraction0.340.000.35
preProcess3prime4.480.034.51
preProcessGeneST0.010.000.01
qa3prime000
qaGeneST0.020.000.02
regress0.230.000.23
regressResult-class0.100.000.09
selectSigGene0.120.000.13
selectSigGeneInt0.30.00.3