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Package 276/462HostnameOS / ArchBUILDCHECKBUILD BIN
mcaGUI 1.1.0
Wade K. Copeland
Snapshot Date: 2011-05-09 07:20:56 -0700 (Mon, 09 May 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/mcaGUI
Last Changed Rev: 54802 / Revision: 55359
Last Changed Date: 2011-04-13 15:36:43 -0700 (Wed, 13 Apr 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: mcaGUI
Version: 1.1.0
Command: /Library/Frameworks/R.framework/Versions/2.14/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch mcaGUI_1.1.0.tar.gz
StartedAt: 2011-05-09 15:37:00 -0700 (Mon, 09 May 2011)
EndedAt: 2011-05-09 15:42:05 -0700 (Mon, 09 May 2011)
EllapsedTime: 305.4 seconds
RetCode: 0
Status:  OK 
CheckDir: mcaGUI.Rcheck
Warnings: 0

Command output

* using log directory ‘/Users/biocbuild/bbs-2.9-bioc/meat/mcaGUI.Rcheck’
* using R version 2.14.0 Under development (unstable) (2011-04-24 r55634)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘mcaGUI/DESCRIPTION’ ... OK
* this is package ‘mcaGUI’ version ‘1.1.0’
* checking package name space information ... OK
* checking package dependencies ... NOTE
Package which this enhances but not available for checking: iplots
* checking if this is a source package ... OK
* checking whether package ‘mcaGUI’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.editDFProperties : <anonymous>: no visible binding for global variable
  ‘getType’
.newSet : setISetByName: no visible global function definition for
  ‘iset.list’
.newSet : setISetByName: no visible global function definition for
  ‘iset.set’
.newSet: no visible global function definition for ‘iset.list’
.newSet: no visible global function definition for ‘iset.set’
.newSet: no visible global function definition for ‘iset.new’
.newSet: no visible global function definition for ‘iset.df’
.newSet : <anonymous>: no visible global function definition for ‘ibox’
.newSet : <anonymous>: no visible global function definition for
  ‘imosaic’
.newSet : <anonymous>: no visible global function definition for ‘ipcp’
.newSet : <anonymous>: no visible global function definition for
  ‘iset.selected’
.newSet : <anonymous>: no visible global function definition for
  ‘iset.select’
.newSet : <anonymous>: no visible global function definition for
  ‘iplot.cur’
.newSet : <anonymous>: no visible global function definition for
  ‘iplot.list’
.newSet : <anonymous>: no visible global function definition for
  ‘iplot.set’
.newSet : <anonymous> : addTrendLine: no visible global function
  definition for ‘iset.selected’
.newSet : <anonymous> : addTrendLine: no visible global function
  definition for ‘iabline’
.newSet : <anonymous> : addTrendLine: no visible global function
  definition for ‘ilines’
.newSet : <anonymous>: no visible global function definition for
  ‘iobj.rm’
.newSet : <anonymous>: no visible global function definition for
  ‘iobj.cur’
.newSet : <anonymous>: no visible global function definition for
  ‘.jstrVal’
.newSet : getCurrentPlotNameType: no visible global function definition
  for ‘iplot.list’
.newSet : getCurrentPlotNameType: no visible global function definition
  for ‘iplot.cur’
OTUbasereader : OTUbase: no visible binding for '<<-' assignment to
  ‘OTUset’
Proportion_Or_Count_Reader : createAbundanceTable: no visible binding
  for global variable ‘Sample_Data’
Proportion_Or_Count_Reader : createAbundanceTable: no visible binding
  for global variable ‘collab2’
Proportion_Or_Count_Reader : new.window : createAssignmentData: no
  visible binding for '<<-' assignment to ‘collab2’
constructionOfNormal : updatePlot: no visible binding for global
  variable ‘x’
histogramAndDensity : addDensity: no visible binding for global
  variable ‘x’
lsDatasets: no visible global function definition for ‘.GlobalEnv’
lsFunctions: no visible global function definition for ‘.GlobalEnv’
lsModels: no visible global function definition for ‘.GlobalEnv’
lsTs: no visible global function definition for ‘.GlobalEnv’
mcaGUI: no visible binding for global variable ‘pmg.user.menu’
mcaGUI: no visible binding for global variable ‘pmg.menubar’
mcaGUI: no visible binding for '<<-' assignment to ‘send’
probabilityCalculator : updatePlot: no visible binding for global
  variable ‘x’
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking examples ... OK
* checking PDF version of manual ... OK

mcaGUI.Rcheck/00install.out:

* installing *source* package ‘mcaGUI’ ...
** R
** inst
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
================================================================================
Welcome to OTUbase version 1.3.0
Loading mcaGUI()
[1] "You can access the mcaGUI vignette by browsing to:  "
[1] "/Users/biocbuild/bbs-2.9-bioc/meat/mcaGUI.Rcheck/mcaGUI/doc/An_Introduction_and_User_Guide_for_mcaGUI.pdf"
GUI requires an interactive environment

* DONE (mcaGUI)

mcaGUI.Rcheck/mcaGUI-Ex.timings:

nameusersystemelapsed
mcaGUI000
pmgDynamic000
pmgRepeatTrials0.9210.0621.007