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Package 270/462HostnameOS / ArchBUILDCHECKBUILD BIN
marray 1.31.0
Yee Hwa (Jean) Yang
Snapshot Date: 2011-05-09 07:20:56 -0700 (Mon, 09 May 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/marray
Last Changed Rev: 54802 / Revision: 55359
Last Changed Date: 2011-04-13 15:36:43 -0700 (Wed, 13 Apr 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: marray
Version: 1.31.0
Command: /home/biocbuild/bbs-2.9-bioc/R/bin/R CMD check --no-vignettes --timings marray_1.31.0.tar.gz
StartedAt: 2011-05-09 13:08:50 -0700 (Mon, 09 May 2011)
EndedAt: 2011-05-09 13:10:29 -0700 (Mon, 09 May 2011)
EllapsedTime: 99.3 seconds
RetCode: 0
Status:  OK 
CheckDir: marray.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.9-bioc/meat/marray.Rcheck’
* using R version 2.14.0 Under development (unstable) (2011-04-18 r55504)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘marray/DESCRIPTION’ ... OK
* this is package ‘marray’ version ‘1.31.0’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘marray’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 12.3Mb
  sub-directories of 1Mb or more:
    swirldata   5.5Mb
    doc         5.8Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
findID: no visible binding for global variable ‘gnames’
findID: no visible global function definition for ‘phenoData’
htmlPage: no visible binding for global variable ‘Gnames’
maTwoSamples: no visible global function definition for ‘gpTools’
scale.na: no visible global function definition for ‘applyy’
widget.TwoSamples: no visible global function definition for
  ‘widgetRender’
widget.mapGeneInfo: no visible global function definition for
  ‘widgetRender’
* checking Rd files ... NOTE
prepare_Rd: cbind.Rd:35-36: Dropping empty section \value
prepare_Rd: cbind.Rd:41-42: Dropping empty section \examples
prepare_Rd: maCompLayout.Rd:19-21: Dropping empty section \details
prepare_Rd: read.marrayInfo.Rd:30-32: Dropping empty section \details
prepare_Rd: read.marrayLayout.Rd:35: Dropping empty section \details
prepare_Rd: read.marrayLayout.Rd:42: Dropping empty section \note
prepare_Rd: read.marrayRaw.Rd:73-75: Dropping empty section \details
prepare_Rd: showLargeObject.Rd:26-27: Dropping empty section \examples
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

marray.Rcheck/00install.out:

* installing *source* package ‘marray’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   ‘marray.Rnw’ 
   ‘marrayClasses.Rnw’ 
   ‘marrayClassesShort.Rnw’ 
   ‘marrayInput.Rnw’ 
   ‘marrayNorm.Rnw’ 
   ‘marrayPlots.Rnw’ 
** testing if installed package can be loaded

* DONE (marray)

marray.Rcheck/marray-Ex.timings:

nameusersystemelapsed
boxplot0.9080.0160.925
checkTargetInfo0.2440.0000.245
dim0.0040.0000.003
findID0.1400.0040.143
htmlPage0.1880.0000.186
image0.0480.0000.047
ma2D000
maBoxplot000
maColorBar0.0160.0000.018
maCompCoord0.0040.0000.001
maCompInd0.0040.0040.009
maCompLayout0.0120.0000.009
maCompNormA000
maCompPlate0.0080.0000.009
maCoord2Ind0.0000.0000.003
maDefaultPar0.0000.0000.001
maDotsDefaults0.0000.0000.001
maDotsMatch0.0000.0000.002
maGenControls0.1680.0040.175
maGeneTable0.1320.0000.133
maImage1.6200.0201.642
maImage.func000
maInd2Coord0.0040.0000.004
maLegendLines000
maLoess000
maLoessLines000
maMAD000
maMed0.0040.0000.000
maNorm2.9800.0042.983
maNorm2D000
maNormLoess000
maNormMAD000
maNormMain18.277 0.00818.297
maNormMed000
maNormScale0.6880.0000.724
maNum2Logic000
maPalette0.0080.0000.009
maPlot3.1280.0043.199
maPlot.func000
maSelectGnames0.0080.0000.012
maText000
maTop000
mapGeneInfo000
marrayInfo-class0.0000.0000.001
marrayLayout-class000
marrayNorm-class0.7920.0040.796
marrayRaw-class0.3000.0000.297
opVersionID0.0000.0000.002
plotMA2.8970.0002.900
read.Galfile0.1000.0000.101
read.marrayInfo0.0520.0040.054
read.marrayLayout0.1680.0000.170
read.marrayRaw3.4920.0243.516
rm.na0.0000.0000.001
stat.confband.text0.9360.0120.945
stat.gnames0.4400.0040.447
write.list0.1520.0000.154
write.marray0.0800.0000.082
write.xls0.1240.0000.125