Back to the "Multiple platform build/check report" A  B  C  D  E [F] G  H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

Package 149/462HostnameOS / ArchBUILDCHECKBUILD BIN
flowCore 1.19.1
F. Hahne
Snapshot Date: 2011-05-09 07:20:56 -0700 (Mon, 09 May 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/flowCore
Last Changed Rev: 55063 / Revision: 55359
Last Changed Date: 2011-04-25 08:19:48 -0700 (Mon, 25 Apr 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK [ OK ] OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: flowCore
Version: 1.19.1
Command: D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --no-vignettes --timings flowCore_1.19.1.tar.gz
StartedAt: 2011-05-09 16:43:10 -0700 (Mon, 09 May 2011)
EndedAt: 2011-05-09 16:47:11 -0700 (Mon, 09 May 2011)
EllapsedTime: 241.1 seconds
RetCode: 0
Status:  OK  
CheckDir: flowCore.Rcheck
Warnings: 0

Command output

* using log directory 'D:/biocbld/bbs-2.9-bioc/meat/flowCore.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-04-17 r55484)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'flowCore/DESCRIPTION' ... OK
* this is package 'flowCore' version '1.19.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'flowCore' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 18.2Mb
  sub-directories of 1Mb or more:
    data      8.0Mb
    doc       7.2Mb
    extdata   1.1Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

flowCore.Rcheck/00install.out:

* installing *source* package 'flowCore' ...
** libs
x86_64-w64-mingw32-g++  -I"D:/biocbld/BBS-2˜1.9-B/R/include"          -O2 -Wall  -c FastLogicle.cpp -o FastLogicle.o
x86_64-w64-mingw32-g++  -I"D:/biocbld/BBS-2˜1.9-B/R/include"          -O2 -Wall  -c Logicle.cpp -o Logicle.o
x86_64-w64-mingw32-gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"          -O2 -Wall  -std=gnu99 -c biexponential.c -o biexponential.o
x86_64-w64-mingw32-gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"          -O2 -Wall  -std=gnu99 -c inPolygon.c -o inPolygon.o
x86_64-w64-mingw32-gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"          -O2 -Wall  -std=gnu99 -c inPolytope.c -o inPolytope.o
x86_64-w64-mingw32-gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"          -O2 -Wall  -std=gnu99 -c init.c -o init.o
x86_64-w64-mingw32-g++  -I"D:/biocbld/BBS-2˜1.9-B/R/include"          -O2 -Wall  -c logicleTransform.cpp -o logicleTransform.o
x86_64-w64-mingw32-g++ -shared -s -static-libgcc -o flowCore.dll tmp.def FastLogicle.o Logicle.o biexponential.o inPolygon.o inPolytope.o init.o logicleTransform.o -LD:/biocbld/BBS-2˜1.9-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-2.9-bioc/meat/flowCore.Rcheck/flowCore/libs/x64
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

Loading required package: robustbase
Loading required package: pcaPP
Loading required package: mvtnorm
Scalable Robust Estimators with High Breakdown Point (version 1.3-00)
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'HowTo-flowCore.Rnw' 
** testing if installed package can be loaded
Scalable Robust Estimators with High Breakdown Point (version 1.3-00)

* DONE (flowCore)

flowCore.Rcheck/flowCore-Ex.timings:

nameusersystemelapsed
EHtrans-class0.250.010.27
Subset-methods1.470.001.48
actionItem-class000
arcsinhTransform0.230.000.23
asinht-class0.10.00.1
biexponentialTransform10.95 0.2211.17
boundaryFilter-class0.330.030.36
characterOrTransformation-class000
coerce0.20.00.2
compensateActionItem-class000
compensateView-class000
compensatedParameter-class0.50.00.5
compensation-class0.830.000.83
curv1Filter-class1.020.001.02
curv2Filter-class3.920.024.01
dg1polynomial-class0.110.000.11
each_col-methods0.110.000.11
ellipsoidGate0.150.000.16
exponential-class0.100.000.09
expressionFilter-class0.170.000.17
fcReference-class000
filter-methods1.260.021.28
filter-on-methods0.290.000.29
filterList-class0.010.000.01
filterResult-class000
filterResultList-class2.250.032.28
filterSet-class0.080.000.08
filterSummary-class0.610.000.61
filterSummaryList-class1.800.011.81
flowFrame-class4.780.084.86
flowSet-class4.950.055.00
fsApply0.420.000.42
gateActionItem-class0.020.000.02
gateView-class000
hyperlog-class1.920.031.97
identifier-methods0.090.000.09
inverseLogicleTransform0.850.030.88
invsplitscale-class0.090.020.11
keyword-methods1.050.011.06
kmeansFilter0.340.000.34
linearTransform0.130.000.13
lnTransform3.670.063.73
logTransform0.250.000.25
logarithm-class0.090.000.10
logicalFilterResult-class000
logicleTransform0.970.000.96
manyFilterResult-class000
multipleFilterResult-class000
norm2Filter-class0.270.001.14
normalizeActionItem-class000
normalizeView-class000
parameters-methods0.080.000.08
polygonGate0.150.000.16
quadGate0.490.000.48
quadratic-class0.090.020.11
quadraticTransform0.110.000.11
ratio-class0.090.000.10
read.FCS0.130.000.12
read.FCSheader0.010.000.02
read.flowSet0.330.000.33
rectangleGate0.250.020.26
sampleFilter-class0.140.000.14
scaleTransform0.110.000.11
singleParameterTransform-class000
sinht-class0.090.000.09
split-methods1.740.011.75
splitScaleTransform3.680.093.78
splitscale-class0.10.00.1
squareroot-class0.10.00.1
subsettingActionItem-class000
subsettingView-class000
timeFilter-class2.790.042.82
transform-class0.020.000.02
transformActionItem-class000
transformFilter-class0.220.000.22
transformList-class0.870.000.87
transformMap-class000
transformView-class000
truncateTransform0.130.010.14
unitytransform-class0.090.000.10
view-class000
workFlow-class000
write.FCS0.060.020.08
write.flowSet1.160.041.20