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Package 147/462HostnameOS / ArchBUILDCHECKBUILD BIN
flagme 1.9.0
Mark Robinson
Snapshot Date: 2011-05-09 07:20:56 -0700 (Mon, 09 May 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/flagme
Last Changed Rev: 54810 / Revision: 55359
Last Changed Date: 2011-04-13 18:14:51 -0700 (Wed, 13 Apr 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: flagme
Version: 1.9.0
Command: /home/biocbuild/bbs-2.9-bioc/R/bin/R CMD check --no-vignettes --timings flagme_1.9.0.tar.gz
StartedAt: 2011-05-09 12:20:12 -0700 (Mon, 09 May 2011)
EndedAt: 2011-05-09 12:21:33 -0700 (Mon, 09 May 2011)
EllapsedTime: 80.9 seconds
RetCode: 0
Status:  OK 
CheckDir: flagme.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.9-bioc/meat/flagme.Rcheck’
* using R version 2.14.0 Under development (unstable) (2011-04-18 r55504)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘flagme/DESCRIPTION’ ... OK
* this is package ‘flagme’ version ‘1.9.0’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘flagme’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

flagme.Rcheck/00install.out:

* installing *source* package ‘flagme’ ...
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.9-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c dp.c -o dp.o
dp.c: In function ‘dp’:
dp.c:217:30: warning: ‘tb’ may be used uninitialized in this function
dp.c:218:21: warning: ‘cur_min’ may be used uninitialized in this function
gcc -std=gnu99 -I/home/biocbuild/bbs-2.9-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c init.c -o init.o
gcc -std=gnu99 -shared -L/usr/local/lib64 -o flagme.so dp.o init.o -L/home/biocbuild/bbs-2.9-bioc/R/lib -lR
installing to /loc/home/biocbuild/bbs-2.9-bioc/meat/flagme.Rcheck/flagme/libs
** R
** inst
** preparing package for lazy loading
Package SparseM (0.89) loaded.
	   To cite, see citation("SparseM")

Creating a new generic function for "plot" in "flagme"
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   ‘flagme.Rnw’ using ‘UTF-8’ 
** testing if installed package can be loaded

* DONE (flagme)

flagme.Rcheck/flagme-Ex.timings:

nameusersystemelapsed
addAMDISPeaks0.8800.0480.980
addChromaTOFPeaks0.4640.0240.488
betweenAlignment000
calcTimeDiffs1.6200.1041.746
clusterAlignment1.7040.0841.803
compress1.5720.0641.641
dp1.4960.0881.684
gatherInfo1.4720.0761.624
imputePeaks2.5720.1042.832
multipleAlignment1.7000.1001.987
normDotProduct1.4490.0601.527
parseChromaTOF4.8480.0004.887
parseELU5.0120.0005.133
peaksAlignment000
peaksDataset0.8640.0600.950
plot1.1400.1081.278
plotImage0.3640.0400.404
progressiveAlignment1.5320.0321.565
rmaFitUnit1.9090.0561.968