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Package 78/462HostnameOS / ArchBUILDCHECKBUILD BIN
cellHTS2 2.17.0
Florian Hahne
Snapshot Date: 2011-05-09 07:20:56 -0700 (Mon, 09 May 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/cellHTS2
Last Changed Rev: 54802 / Revision: 55359
Last Changed Date: 2011-04-13 15:36:43 -0700 (Wed, 13 Apr 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK [ OK ] OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: cellHTS2
Version: 2.17.0
Command: D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --no-vignettes --timings cellHTS2_2.17.0.tar.gz
StartedAt: 2011-05-09 15:36:17 -0700 (Mon, 09 May 2011)
EndedAt: 2011-05-09 15:42:07 -0700 (Mon, 09 May 2011)
EllapsedTime: 349.6 seconds
RetCode: 0
Status:  OK  
CheckDir: cellHTS2.Rcheck
Warnings: 0

Command output

* using log directory 'D:/biocbld/bbs-2.9-bioc/meat/cellHTS2.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-04-17 r55484)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'cellHTS2/DESCRIPTION' ... OK
* this is package 'cellHTS2' version '2.17.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'cellHTS2' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  6.7Mb
  sub-directories of 1Mb or more:
    data     1.2Mb
    doc      1.9Mb
    KcViab   2.0Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running 'test.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

cellHTS2.Rcheck/00install.out:

* installing *source* package 'cellHTS2' ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

Loading required package: akima
Loading required package: lattice
locfit 1.5-6 	 2010-01-20 
Scalable Robust Estimators with High Breakdown Point (version 1.3-00)
Creating a new generic function for "lines" in "cellHTS2"
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'cellhts2.Rnw' 
   'cellhts2Complete.Rnw' 
   'twoChannels.Rnw' 
   'twoWay.Rnw' 
** testing if installed package can be loaded
locfit 1.5-6 	 2010-01-20 
Scalable Robust Estimators with High Breakdown Point (version 1.3-00)

* DONE (cellHTS2)

cellHTS2.Rcheck/cellHTS2-Ex.timings:

nameusersystemelapsed
Bscore2.170.002.86
ROC-class0.310.000.33
ROC1.220.021.54
annotate0.920.030.97
bdgpbiomart0.350.010.39
buildCellHTS20.310.000.33
cellHTS-class0.980.001.00
configurationAsScreenPlot0.890.001.33
configure0.930.021.06
convertOldCellHTS1.090.001.14
convertWellCoordinates000
data-KcViab0.110.010.13
data-KcViabSmall0.020.000.01
data-dualCh0.010.000.02
data-oldKcViabSmall000
getDynamicRange0.820.001.24
getEnVisionRawData0.040.000.03
getMeasureRepAgreement0.610.000.67
getTopTable1.310.001.39
getZfactor0.400.000.41
imageScreen0.990.001.03
normalizePlates1.610.001.78
oneRowPerId000
plotSpatialEffects1.340.001.61
readHTAnalystData1.160.021.42
readPlateList0.830.010.89
scoreReplicates1.070.001.08
scores2calls1.300.001.42
setSettings0.020.000.02
spatialNormalization1.390.001.98
summarizeChannels1.830.022.47
summarizeReplicates1.070.001.13
templateDescriptionFile000
updateCellHTS0.020.000.01
write.tabdel0.030.000.22
writeReport0.000.000.02
writeTab0.030.000.03