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Package 77/462HostnameOS / ArchBUILDCHECKBUILD BIN
cellHTS 1.23.0
Ligia Bras
Snapshot Date: 2011-05-09 07:20:56 -0700 (Mon, 09 May 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/cellHTS
Last Changed Rev: 54802 / Revision: 55359
Last Changed Date: 2011-04-13 15:36:43 -0700 (Wed, 13 Apr 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: cellHTS
Version: 1.23.0
Command: /home/biocbuild/bbs-2.9-bioc/R/bin/R CMD check --no-vignettes --timings cellHTS_1.23.0.tar.gz
StartedAt: 2011-05-09 11:52:14 -0700 (Mon, 09 May 2011)
EndedAt: 2011-05-09 11:53:31 -0700 (Mon, 09 May 2011)
EllapsedTime: 76.3 seconds
RetCode: 0
Status:  OK 
CheckDir: cellHTS.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.9-bioc/meat/cellHTS.Rcheck’
* using R version 2.14.0 Under development (unstable) (2011-04-18 r55504)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘cellHTS/DESCRIPTION’ ... OK
* this is package ‘cellHTS’ version ‘1.23.0’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘cellHTS’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is  8.9Mb
  sub-directories of 1Mb or more:
    KcViab   2.0Mb
    data     1.4Mb
    doc      5.0Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: oneRowPerId.Rd:19: Dropping empty section \details
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

cellHTS.Rcheck/00install.out:

* installing *source* package ‘cellHTS’ ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

Loading required package: RColorBrewer
Loading required package: grid
Loading required package: rrcov
Loading required package: robustbase
Loading required package: pcaPP
Loading required package: mvtnorm
Scalable Robust Estimators with High Breakdown Point (version 1.3-00)
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   ‘cellhts.Rnw’ 
   ‘twoChannels.Rnw’ 
   ‘twoWay.Rnw’ 
** testing if installed package can be loaded
Scalable Robust Estimators with High Breakdown Point (version 1.3-00)

* DONE (cellHTS)

cellHTS.Rcheck/cellHTS-Ex.timings:

nameusersystemelapsed
Bscore0.6880.0000.684
ROC0.0040.0080.009
annotate000
bdgpbiomart0.3160.0040.317
configure0.0000.0000.001
data-KcViab0.2560.0040.257
data-KcViabSmall0.0080.0000.008
getEnVisionRawData0.0360.0000.038
getLibraryPlate0.0240.0000.031
getMatrix0.0080.0000.008
imageScreen0.2280.0040.232
normalizeChannels000
normalizePlates0.0080.0040.011
oneRowPerId0.0040.0000.005
plotPlateLibrary0.9320.0160.947
plotSpatialEffects0.4840.0000.483
print.cellHTS0.0120.0000.012
readPlateData0.1560.0040.159
screenMatch0.3960.0040.400
summarizeChannels000
summarizeReplicates0.0600.0000.064
write.tabdel0.0360.0000.034
writeReport0.0080.0000.010
writeTab0.0160.0000.015