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Package 272/462HostnameOS / ArchBUILDCHECKBUILD BIN
MassArray 1.5.0
Reid F. Thompson
Snapshot Date: 2011-05-09 07:20:56 -0700 (Mon, 09 May 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/MassArray
Last Changed Rev: 55131 / Revision: 55359
Last Changed Date: 2011-04-28 10:32:14 -0700 (Thu, 28 Apr 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: MassArray
Version: 1.5.0
Command: E:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --no-vignettes --timings MassArray_1.5.0.tar.gz
StartedAt: 2011-05-09 14:27:43 -0700 (Mon, 09 May 2011)
EndedAt: 2011-05-09 14:28:51 -0700 (Mon, 09 May 2011)
EllapsedTime: 68.2 seconds
RetCode: 0
Status:  OK  
CheckDir: MassArray.Rcheck
Warnings: 0

Command output

* using log directory 'E:/biocbld/bbs-2.9-bioc/meat/MassArray.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-04-17 r55484)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'MassArray/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'MassArray' version '1.5.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'MassArray' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

MassArray.Rcheck/00install.out:

* installing *source* package 'MassArray' ...
** R
** data
**  moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'MassArray.Rnw' 
** testing if installed package can be loaded

* DONE (MassArray)

MassArray.Rcheck/MassArray-Ex.timings:

nameusersystemelapsed
MassArray.example.data0.020.000.02
MassArrayData-class000
MassArrayFragment-class0.020.000.01
MassArrayPeak-class000
MassArraySpectrum-class000
ampliconPrediction2.260.002.30
analyzeCpGs0.20.00.2
bisConvert000
calcMW000
calcMeth0.020.000.02
calcPercentAdduct0.060.000.06
calcPercentConversion0.050.000.05
combine4.220.004.26
convControl0.030.000.03
countCGs000
createWiggle0.020.000.02
estimatePrimerDimer0.100.000.11
evaluateSNPs25.63 0.0025.69
expandSequence000
findCollisions000
findFragments0.030.000.03
findPeaks000
identifySNPs0.020.000.01
inSilicoFragmentation0.010.000.02
isAssayable000
numCollisions000
plot.MassArrayData0.050.000.05
position0.030.000.03
revComplement000
rnaDigest000
samples0.030.000.03
sum.MassArraySpectrum0.600.000.59