Package: MLInterfaces

Version: 1.33.0

Command: E:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --no-vignettes --timings MLInterfaces_1.33.0.tar.gz

StartedAt: 2011-05-09 14:37:47 -0700 (Mon, 09 May 2011)

EndedAt: 2011-05-09 14:40:34 -0700 (Mon, 09 May 2011)

EllapsedTime: 166.7 seconds

RetCode: 0

Status:  OK

CheckDir: MLInterfaces.Rcheck

Warnings: 0

* using log directory 'E:/biocbld/bbs-2.9-bioc/meat/MLInterfaces.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-04-17 r55484)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'MLInterfaces/DESCRIPTION' ... OK
* this is package 'MLInterfaces' version '1.33.0'
* checking package name space information ... OK
* checking package dependencies ... NOTE
Package which this enhances but not available for checking: multicore
* checking if this is a source package ... OK
* checking whether package 'MLInterfaces' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: MLIntInternals.Rd:40-41: Dropping empty section \examples
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Package(s) unavailable to check Rd xrefs: 'multicore'
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... NOTE
'library' or 'require' call not declared from: 'lattice'
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'MLInterfaces' ...
** R
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.


Attaching package: 'genefilter'

The following object(s) are masked from 'package:MASS':

    area

Loading required package: AnnotationDbi
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'MLInterfaces.Rnw' 
   'MLint_devel.Rnw' 
   'MLprac2_2.Rnw' 
   'xvalComputerClusters.Rnw' 
** testing if installed package can be loaded

* DONE (MLInterfaces)

name	user	system	elapsed
MLearn-new	21.75	0.20	22.82
RAB	0.17	0.00	0.20
balKfold.xvspec	0.02	0.00	0.02
classifierOutput-class	4.41	0.00	4.43
clusteringOutput-class	0	0	0
confuMat-methods	0.48	0.03	0.52
fs.absT	0.01	0.00	0.01
fsHistory	0.11	0.00	0.11
learnerSchema-class	0	0	0
planarPlot-methods	4.22	0.07	4.28
raboostCont-class	0	0	0
varImpStruct-class	0.81	0.06	1.05
xvalLoop	0	0	0
xvalSpec	0.21	0.01	0.22