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Package 246/462HostnameOS / ArchBUILDCHECKBUILD BIN
KEGGSOAP 1.27.0
Biocore Team c/o BioC user list
Snapshot Date: 2011-05-09 07:20:56 -0700 (Mon, 09 May 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/KEGGSOAP
Last Changed Rev: 54802 / Revision: 55359
Last Changed Date: 2011-04-13 15:36:43 -0700 (Wed, 13 Apr 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: KEGGSOAP
Version: 1.27.0
Command: /Library/Frameworks/R.framework/Versions/2.14/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch KEGGSOAP_1.27.0.tar.gz
StartedAt: 2011-05-09 15:20:35 -0700 (Mon, 09 May 2011)
EndedAt: 2011-05-09 15:22:28 -0700 (Mon, 09 May 2011)
EllapsedTime: 113.0 seconds
RetCode: 0
Status:  OK 
CheckDir: KEGGSOAP.Rcheck
Warnings: 0

Command output

* using log directory ‘/Users/biocbuild/bbs-2.9-bioc/meat/KEGGSOAP.Rcheck’
* using R version 2.14.0 Under development (unstable) (2011-04-24 r55634)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘KEGGSOAP/DESCRIPTION’ ... OK
* this is package ‘KEGGSOAP’ version ‘1.27.0’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘KEGGSOAP’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking PDF version of manual ... OK

KEGGSOAP.Rcheck/00install.out:

* installing *source* package ‘KEGGSOAP’ ...
** R
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (KEGGSOAP)

KEGGSOAP.Rcheck/KEGGSOAP-Ex.timings:

nameusersystemelapsed
bconv0.0430.0023.961
bget0.0620.0032.812
get.genes.by.motifs0.0570.0022.565
get.genes.by.organism0.0340.0010.893
get.genes.by.pathway0.0990.0023.247
get.ko.by.gene0.1750.0037.882
get.motifs.by.gene0.0390.0011.409
get.paralogs.by.gene0.0810.0011.671
get.pathways.by.genes0.0830.0023.288
getBestNeighbors0.1650.0033.601
list.organisms2.6870.0456.780
mark.pathway.by.objects0.0500.0025.690
search.compounds.by.name0.1860.0047.398
search.glycans.by.name0.2060.0046.332