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Package 176/462HostnameOS / ArchBUILDCHECKBUILD BIN
GeneR 2.23.0
Y. d'Aubenton-Carafa
Snapshot Date: 2011-05-09 07:20:56 -0700 (Mon, 09 May 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/GeneR
Last Changed Rev: 54802 / Revision: 55359
Last Changed Date: 2011-04-13 15:36:43 -0700 (Wed, 13 Apr 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK [ OK ]
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  ERROR  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: GeneR
Version: 2.23.0
Command: E:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD INSTALL --build --library=GeneR.buildbin-libdir GeneR_2.23.0.tar.gz
StartedAt: 2011-05-09 16:17:25 -0700 (Mon, 09 May 2011)
EndedAt: 2011-05-09 16:17:46 -0700 (Mon, 09 May 2011)
EllapsedTime: 21.1 seconds
RetCode: 0
Status:  OK  
PackageFile: GeneR_2.23.0.zip
PackageFileSize: 627.4 KiB

Command output

* installing *source* package 'GeneR' ...
** libs
g++  -I"E:/biocbld/bbs-2.9-bioc/R/include"          -O2 -Wall  -c GeneR_glob.cc -o GeneR_glob.o
g++  -I"E:/biocbld/bbs-2.9-bioc/R/include"          -O2 -Wall  -c GeneR_seq.cc -o GeneR_seq.o
g++  -I"E:/biocbld/bbs-2.9-bioc/R/include"          -O2 -Wall  -c complementaire.cc -o complementaire.o
g++  -I"E:/biocbld/bbs-2.9-bioc/R/include"          -O2 -Wall  -c compoSeq.cc -o compoSeq.o
g++  -I"E:/biocbld/bbs-2.9-bioc/R/include"          -O2 -Wall  -c dnaRna.cc -o dnaRna.o
dnaRna.cc: In function 'void dna_rna(int*, int*, int*, int*, int*)':
dnaRna.cc:62:15: warning: value computed is not used
dnaRna.cc:63:13: warning: value computed is not used
dnaRna.cc: In function 'void rna_dna(int*, int*, int*, int*, int*)':
dnaRna.cc:108:15: warning: value computed is not used
dnaRna.cc:109:13: warning: value computed is not used
g++  -I"E:/biocbld/bbs-2.9-bioc/R/include"          -O2 -Wall  -c libIndex.cc -o libIndex.o
g++  -I"E:/biocbld/bbs-2.9-bioc/R/include"          -O2 -Wall  -c libStrings.cc -o libStrings.o
g++  -I"E:/biocbld/bbs-2.9-bioc/R/include"          -O2 -Wall  -c makeIndex.cc -o makeIndex.o
g++  -I"E:/biocbld/bbs-2.9-bioc/R/include"          -O2 -Wall  -c masked.cc -o masked.o
g++  -I"E:/biocbld/bbs-2.9-bioc/R/include"          -O2 -Wall  -c misc.cc -o misc.o
misc.cc: In function 'SEXPREC* str_to_nbstr(SEXPREC*, SEXPREC*)':
misc.cc:31:18: warning: 'multiple' may be used uninitialized in this function
misc.cc:30:8: warning: 'ans' may be used uninitialized in this function
g++  -I"E:/biocbld/bbs-2.9-bioc/R/include"          -O2 -Wall  -c readEmblDescript.cc -o readEmblDescript.o
g++  -I"E:/biocbld/bbs-2.9-bioc/R/include"          -O2 -Wall  -c readIndex.cc -o readIndex.o
g++  -I"E:/biocbld/bbs-2.9-bioc/R/include"          -O2 -Wall  -c readLocation.cc -o readLocation.o
g++  -I"E:/biocbld/bbs-2.9-bioc/R/include"          -O2 -Wall  -c readSeqEmbl.cc -o readSeqEmbl.o
g++  -I"E:/biocbld/bbs-2.9-bioc/R/include"          -O2 -Wall  -c readSeqFasta.cc -o readSeqFasta.o
g++  -I"E:/biocbld/bbs-2.9-bioc/R/include"          -O2 -Wall  -c readSeqGbk.cc -o readSeqGbk.o
g++  -I"E:/biocbld/bbs-2.9-bioc/R/include"          -O2 -Wall  -c seqManip.cc -o seqManip.o
gcc  -I"E:/biocbld/bbs-2.9-bioc/R/include"          -O3 -Wall  -std=gnu99 -c strcasestr.c -o strcasestr.o
g++  -I"E:/biocbld/bbs-2.9-bioc/R/include"          -O2 -Wall  -c translate.cc -o translate.o
g++  -I"E:/biocbld/bbs-2.9-bioc/R/include"          -O2 -Wall  -c upperSeq.cc -o upperSeq.o
g++  -I"E:/biocbld/bbs-2.9-bioc/R/include"          -O2 -Wall  -c vecteurs.cc -o vecteurs.o
g++  -I"E:/biocbld/bbs-2.9-bioc/R/include"          -O2 -Wall  -c writeFasta.cc -o writeFasta.o
g++ -shared -s -static-libgcc -o GeneR.dll tmp.def GeneR_glob.o GeneR_seq.o complementaire.o compoSeq.o dnaRna.o libIndex.o libStrings.o makeIndex.o masked.o misc.o readEmblDescript.o readIndex.o readLocation.o readSeqEmbl.o readSeqFasta.o readSeqGbk.o seqManip.o strcasestr.o translate.o upperSeq.o vecteurs.o writeFasta.o -LE:/biocbld/bbs-2.9-bioc/R/bin/i386 -lR
installing to E:/biocbld/bbs-2.9-bioc/meat/GeneR.buildbin-libdir/GeneR/libs/i386
** R
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'GeneR.Rnw' 
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GeneR' as GeneR_2.23.0.zip

* DONE (GeneR)