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Package 203/462HostnameOS / ArchBUILDCHECKBUILD BIN
GOSemSim 1.11.0
Guangchuang Yu
Snapshot Date: 2011-05-09 07:20:56 -0700 (Mon, 09 May 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/GOSemSim
Last Changed Rev: 54810 / Revision: 55359
Last Changed Date: 2011-04-13 18:14:51 -0700 (Wed, 13 Apr 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK [ OK ] OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: GOSemSim
Version: 1.11.0
Command: D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --no-vignettes --timings GOSemSim_1.11.0.tar.gz
StartedAt: 2011-05-09 17:27:47 -0700 (Mon, 09 May 2011)
EndedAt: 2011-05-09 17:31:34 -0700 (Mon, 09 May 2011)
EllapsedTime: 227.5 seconds
RetCode: 0
Status:  OK  
CheckDir: GOSemSim.Rcheck
Warnings: 0

Command output

* using log directory 'D:/biocbld/bbs-2.9-bioc/meat/GOSemSim.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-04-17 r55484)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'GOSemSim/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'GOSemSim' version '1.11.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'GOSemSim' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

GOSemSim.Rcheck/00install.out:

* installing *source* package 'GOSemSim' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: DBI




















** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'GOSemSim.Rnw' 
** testing if installed package can be loaded

* DONE (GOSemSim)

GOSemSim.Rcheck/GOSemSim-Ex.timings:

nameusersystemelapsed
GOSet-class0.530.060.62
GOSet-methods0.020.000.02
GeneClusterSet-class19.64 0.1920.28
GeneSet-class10.34 0.0410.38
Params-class000
Params-methods0.020.010.03
clusterSim10.29 0.0611.05
geneSim9.880.009.89
goSim0.220.000.22
mclusterSim10.96 0.0210.98
mgeneSim9.580.029.61
mgoSim0.270.000.27