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Package 27/462HostnameOS / ArchBUILDCHECKBUILD BIN
Agi4x44PreProcess 1.13.1
Pedro Lopez-Romero
Snapshot Date: 2011-05-09 07:20:56 -0700 (Mon, 09 May 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Agi4x44PreProcess
Last Changed Rev: 55341 / Revision: 55359
Last Changed Date: 2011-05-08 20:15:32 -0700 (Sun, 08 May 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: Agi4x44PreProcess
Version: 1.13.1
Command: /home/biocbuild/bbs-2.9-bioc/R/bin/R CMD check --no-vignettes --timings Agi4x44PreProcess_1.13.1.tar.gz
StartedAt: 2011-05-09 11:19:02 -0700 (Mon, 09 May 2011)
EndedAt: 2011-05-09 11:20:30 -0700 (Mon, 09 May 2011)
EllapsedTime: 88.9 seconds
RetCode: 0
Status:  OK 
CheckDir: Agi4x44PreProcess.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.9-bioc/meat/Agi4x44PreProcess.Rcheck’
* using R version 2.14.0 Under development (unstable) (2011-04-18 r55504)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘Agi4x44PreProcess/DESCRIPTION’ ... OK
* this is package ‘Agi4x44PreProcess’ version ‘1.13.1’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘Agi4x44PreProcess’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

Agi4x44PreProcess.Rcheck/00install.out:

* installing *source* package ‘Agi4x44PreProcess’ ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

Loading required package: AnnotationDbi
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   ‘Agi4x44PreProcess.Rnw’ using ‘latin1’ 
** testing if installed package can be loaded

* DONE (Agi4x44PreProcess)

Agi4x44PreProcess.Rcheck/Agi4x44PreProcess-Ex.timings:

nameusersystemelapsed
Agi4x44PreProcess-package0.0000.0000.001
BGandNorm000
BoxPlot000
CV.rep.probes0.0000.0000.001
HeatMap000
MVAplotMED000
MVAplotMEDctrl2.3840.0322.418
PCAplot0.0000.0000.001
RLE000
boxplotNegCtrl0.0040.0000.000
build.eset000
build.mappings000
dd000
ensembl.htmlpage000
filter.NonUnifOL000
filter.PopnOL000
filter.control000
filter.isfound0.0000.0000.001
filter.probes0.0000.0000.001
filter.saturated000
filter.wellaboveBG000
filter.wellaboveNEG000
genes.rpt.agi4.8680.0805.002
gsea.files000
hierclus000
plotDensity000
read.AgilentFE0.1720.0000.176
read.targets0.0040.0000.003
summarize.probe000
targets000
write.eset000