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Package 27/462HostnameOS / ArchBUILDCHECKBUILD BIN
Agi4x44PreProcess 1.13.1
Pedro Lopez-Romero
Snapshot Date: 2011-05-09 07:20:56 -0700 (Mon, 09 May 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Agi4x44PreProcess
Last Changed Rev: 55341 / Revision: 55359
Last Changed Date: 2011-05-08 20:15:32 -0700 (Sun, 08 May 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: Agi4x44PreProcess
Version: 1.13.1
Command: /Library/Frameworks/R.framework/Versions/2.14/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch Agi4x44PreProcess_1.13.1.tar.gz
StartedAt: 2011-05-09 12:58:25 -0700 (Mon, 09 May 2011)
EndedAt: 2011-05-09 13:00:21 -0700 (Mon, 09 May 2011)
EllapsedTime: 115.8 seconds
RetCode: 0
Status:  OK 
CheckDir: Agi4x44PreProcess.Rcheck
Warnings: 0

Command output

* using log directory ‘/Users/biocbuild/bbs-2.9-bioc/meat/Agi4x44PreProcess.Rcheck’
* using R version 2.14.0 Under development (unstable) (2011-04-24 r55634)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘Agi4x44PreProcess/DESCRIPTION’ ... OK
* this is package ‘Agi4x44PreProcess’ version ‘1.13.1’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘Agi4x44PreProcess’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... NOTE
  ‘qpdf’ made some significant size reductions:
     compacted ‘Agi4x44PreProcess.pdf’ from 748Kb to 213Kb
  consider running tools::compactPDF() on these files
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

Agi4x44PreProcess.Rcheck/00install.out:

* installing *source* package ‘Agi4x44PreProcess’ ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

Loading required package: AnnotationDbi
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   ‘Agi4x44PreProcess.Rnw’ using ‘latin1’ 
** testing if installed package can be loaded

* DONE (Agi4x44PreProcess)

Agi4x44PreProcess.Rcheck/Agi4x44PreProcess-Ex.timings:

nameusersystemelapsed
Agi4x44PreProcess-package0.0010.0010.002
BGandNorm000
BoxPlot0.0000.0000.001
CV.rep.probes0.0000.0000.001
HeatMap0.0010.0010.001
MVAplotMED0.0010.0000.000
MVAplotMEDctrl2.5970.0592.868
PCAplot000
RLE0.0000.0000.001
boxplotNegCtrl000
build.eset0.0000.0000.001
build.mappings0.0010.0000.000
dd0.0010.0000.001
ensembl.htmlpage000
filter.NonUnifOL0.0000.0000.001
filter.PopnOL0.0000.0000.001
filter.control000
filter.isfound0.0010.0000.000
filter.probes0.0010.0010.001
filter.saturated0.0010.0000.000
filter.wellaboveBG0.0000.0000.001
filter.wellaboveNEG000
genes.rpt.agi4.4310.3395.033
gsea.files0.0010.0010.001
hierclus0.0010.0000.000
plotDensity0.0010.0010.000
read.AgilentFE0.3050.0130.325
read.targets0.0030.0010.004
summarize.probe0.0010.0000.001
targets0.0010.0000.000
write.eset0.0000.0000.001