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yeastCC 1.2.12
Sandrine Dudoit
Snapshot Date: 2011-10-18 23:15:16 -0700 (Tue, 18 Oct 2011)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/yeastCC
Last Changed Rev: 1357 / Revision: 1763
Last Changed Date: 2010-10-14 09:39:32 -0700 (Thu, 14 Oct 2010)
lamb1 Linux (openSUSE 11.3) / x86_64  OK [ WARNINGS ]
gewurz Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  WARNINGS  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  WARNINGS  OK 

Summary

Package: yeastCC
Version: 1.2.12
Command: /home/biocbuild/bbs-2.8-bioc/R/bin/R CMD check --no-vignettes --timings yeastCC_1.2.12.tar.gz
StartedAt: 2011-10-19 01:20:50 -0700 (Wed, 19 Oct 2011)
EndedAt: 2011-10-19 01:21:17 -0700 (Wed, 19 Oct 2011)
EllapsedTime: 27.0 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: yeastCC.Rcheck
Warnings: 1

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.8-data-experiment/meat/yeastCC.Rcheck’
* using R version 2.13.2 (2011-09-30)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘yeastCC/DESCRIPTION’ ... OK
* this is package ‘yeastCC’ version ‘1.2.12’
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘yeastCC’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is  6.9Mb
  sub-directories of 1Mb or more:
    doc    2.6Mb
    data   4.2Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  Warning: large data file(s) saved inefficiently:
                 size ASCII compress
  spYCCmeta.rda 430Kb FALSE     none
* checking examples ... OK
* checking PDF version of manual ... OK

WARNING: There was 1 warning, see
  ‘/loc/home/biocbuild/bbs-2.8-data-experiment/meat/yeastCC.Rcheck/00check.log’
for details

yeastCC.Rcheck/00install.out:

* installing *source* package ‘yeastCC’ ...
** R
** data
**  moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (yeastCC)

yeastCC.Rcheck/yeastCC-Ex.timings:

nameusersystemelapsed
breeden0.2200.0080.228
orf8000.0040.0000.002
spYCCmeta0.0080.0000.012
yeastCC0.3000.0080.310