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rfcdmin 1.6.11
N. Le Meur
Snapshot Date: 2011-10-18 23:15:16 -0700 (Tue, 18 Oct 2011)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/rfcdmin
Last Changed Rev: 1077 / Revision: 1763
Last Changed Date: 2009-10-14 00:44:20 -0700 (Wed, 14 Oct 2009)
lamb1 Linux (openSUSE 11.3) / x86_64  OK  WARNINGS 
gewurz Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  WARNINGS  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK [ WARNINGS ] OK 

Summary

Package: rfcdmin
Version: 1.6.11
Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch rfcdmin_1.6.11.tar.gz
StartedAt: 2011-10-19 01:38:28 -0700 (Wed, 19 Oct 2011)
EndedAt: 2011-10-19 01:39:43 -0700 (Wed, 19 Oct 2011)
EllapsedTime: 74.8 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: rfcdmin.Rcheck
Warnings: 1

Command output

* using log directory '/Users/biocbuild/bbs-2.8-data-experiment/meat/rfcdmin.Rcheck'
* using R version 2.13.2 (2011-09-30)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'rfcdmin/DESCRIPTION' ... OK
* this is package 'rfcdmin' version '1.6.11'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'rfcdmin' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 28.2Mb
  sub-directories of 1Mb or more:
    data  23.4Mb
    fcs    4.4Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... NOTE
'library' or 'require' calls not declared from:
  MASS rfcprim
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... NOTE
  
  *** Deprecation warning ***:
  The package 'rflowcyt' is deprecated and will not be supported after Bioconductor release 2.4. 
      Similar functionality is provided in packages flowCore and flowViz .
  
  
* checking data for ASCII and uncompressed saves ... WARNING
  Warning: package needs dependence on R (>= 2.10)
* checking examples ... OK
* checking PDF version of manual ... OK

WARNING: There was 1 warning, see
  '/Users/biocbuild/bbs-2.8-data-experiment/meat/rfcdmin.Rcheck/00check.log'
for details

rfcdmin.Rcheck/00install.out:

* installing *source* package 'rfcdmin' ...
** data
** inst
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (rfcdmin)

rfcdmin.Rcheck/rfcdmin-Ex.timings:

nameusersystemelapsed
FCSRobj.currentmin0.0400.0040.195
FCSRobjmin0.0260.0020.121
MC.053min0.3870.0160.425
PRIM.example.data0.0340.0030.041
PRIM.real.data.min0.0110.0020.013
PerPosROCmin4.9920.1655.517
SEB-NP22.fcs0.0000.0000.001
VRCmin4.1790.1434.368
facscan256.fcs1.0310.0671.115
flowcyt.data6.1100.2656.465
flowcyt.fcs1.1130.0791.207
flowcyt.fluors5.7270.2496.088