Back to the "Multiple platform build/check report"

Package 87/106HostnameOS / ArchBUILDCHECKBUILD BIN
ppiData 0.1.14
Tony Chiang
Snapshot Date: 2011-10-18 23:15:16 -0700 (Tue, 18 Oct 2011)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/ppiData
Last Changed Rev: 1101 / Revision: 1763
Last Changed Date: 2009-12-05 17:17:35 -0800 (Sat, 05 Dec 2009)
lamb1 Linux (openSUSE 11.3) / x86_64  OK [ WARNINGS ]
gewurz Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  WARNINGS  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  WARNINGS  OK 

Summary

Package: ppiData
Version: 0.1.14
Command: /home/biocbuild/bbs-2.8-bioc/R/bin/R CMD check --no-vignettes --timings ppiData_0.1.14.tar.gz
StartedAt: 2011-10-19 01:15:47 -0700 (Wed, 19 Oct 2011)
EndedAt: 2011-10-19 01:16:39 -0700 (Wed, 19 Oct 2011)
EllapsedTime: 52.4 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: ppiData.Rcheck
Warnings: 1

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.8-data-experiment/meat/ppiData.Rcheck’
* using R version 2.13.2 (2011-09-30)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ppiData/DESCRIPTION’ ... OK
* this is package ‘ppiData’ version ‘0.1.14’
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘ppiData’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: intAct2Sys.Rd:33-35: Dropping empty section \examples
prepare_Rd: twTableAPMS.Rd:22-23: Dropping empty section \details
prepare_Rd: twTableAPMS.Rd:24-26: Dropping empty section \source
prepare_Rd: twTableAPMS.Rd:27-28: Dropping empty section \references
prepare_Rd: twTableY2H.Rd:22-23: Dropping empty section \details
prepare_Rd: twTableY2H.Rd:24-26: Dropping empty section \source
prepare_Rd: twTableY2H.Rd:27-28: Dropping empty section \references
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  Warning: large data file(s) saved inefficiently:
               size ASCII compress
  ppipred.rda 896Kb FALSE     none
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning, see
  ‘/loc/home/biocbuild/bbs-2.8-data-experiment/meat/ppiData.Rcheck/00check.log’
for details

ppiData.Rcheck/00install.out:

* installing *source* package ‘ppiData’ ...
** R
** data
**  moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (ppiData)

ppiData.Rcheck/ppiData-Ex.timings:

nameusersystemelapsed
Cagney2001BPGraph0.0040.0000.002
Gavin2002BPGraph0.0000.0000.002
Gavin2006bPGraph0.0040.0000.001
Hazbun2003BPGraph0.0000.0000.001
Ho2002BPGraph0.0040.0000.001
Ito2001BPGraph0.0000.0000.001
ItoCore2001BPGraph0.0000.0040.001
ItoFull2001BPGraph0.0000.0000.001
Krogan2004BPGraph0.0040.0000.001
Krogan2006BPGraph0.0000.0000.001
Tong2002BPGraph0.0040.0000.001
Uetz2000BPGraph10.0000.0000.001
Uetz2000BPGraph20.0040.0000.001
Zhao2005BPGraph0.0040.0000.001
bpExperimentNames0.0000.0040.004
collectIntactPPIData15.613 0.04815.663
createBPList0.0120.0040.018
intActPPIData0.0040.0000.037
map2Systematic0.0000.0000.002
ppipred0.0000.0040.002
sWAC2Sys0.0040.0000.001
stochasticBaits0.0000.0000.005
tableList0.0040.0000.002
twTableAPMS0.0000.0000.002
twTableY2H0.0040.0000.001
viableProteins0.0040.0040.009
y2h0.0000.0040.002
y2hSysGW0.0040.0040.011