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ppiData 0.1.14
Tony Chiang
Snapshot Date: 2011-10-18 23:15:16 -0700 (Tue, 18 Oct 2011)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/ppiData
Last Changed Rev: 1101 / Revision: 1763
Last Changed Date: 2009-12-05 17:17:35 -0800 (Sat, 05 Dec 2009)
lamb1 Linux (openSUSE 11.3) / x86_64  OK  WARNINGS 
gewurz Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK [ WARNINGS ] OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  WARNINGS  OK 

Summary

Package: ppiData
Version: 0.1.14
Command: D:\biocbld\bbs-2.8-bioc\R\bin\R.exe CMD check --no-vignettes --timings --no-multiarch ppiData_0.1.14.tar.gz
StartedAt: 2011-10-19 03:11:13 -0700 (Wed, 19 Oct 2011)
EndedAt: 2011-10-19 03:12:45 -0700 (Wed, 19 Oct 2011)
EllapsedTime: 91.1 seconds
RetCode: 0
Status:  WARNINGS  
CheckDir: ppiData.Rcheck
Warnings: 2

Command output

* using log directory 'D:/biocbld/bbs-2.8-data-experiment/meat/ppiData.Rcheck'
* using R version 2.13.2 (2011-09-30)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ppiData/DESCRIPTION' ... OK
* this is package 'ppiData' version '0.1.14'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'ppiData' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: intAct2Sys.Rd:33-35: Dropping empty section \examples
prepare_Rd: twTableAPMS.Rd:22-23: Dropping empty section \details
prepare_Rd: twTableAPMS.Rd:24-26: Dropping empty section \source
prepare_Rd: twTableAPMS.Rd:27-28: Dropping empty section \references
prepare_Rd: twTableY2H.Rd:22-23: Dropping empty section \details
prepare_Rd: twTableY2H.Rd:24-26: Dropping empty section \source
prepare_Rd: twTableY2H.Rd:27-28: Dropping empty section \references
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  Warning: large data file(s) saved inefficiently:
               size ASCII compress
  ppipred.rda 896Kb FALSE     none
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... WARNING
Package vignette(s) without corresponding PDF:
   ppiStats.Rnw

* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There were 2 warnings, see
  'D:/biocbld/bbs-2.8-data-experiment/meat/ppiData.Rcheck/00check.log'
for details

ppiData.Rcheck/00install.out:

* installing *source* package 'ppiData' ...
** R
** data
**  moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (ppiData)

ppiData.Rcheck/ppiData-Ex.timings:

nameusersystemelapsed
Cagney2001BPGraph0.010.000.02
Gavin2002BPGraph000
Gavin2006bPGraph000
Hazbun2003BPGraph0.020.000.01
Ho2002BPGraph000
Ito2001BPGraph000
ItoCore2001BPGraph0.010.000.02
ItoFull2001BPGraph000
Krogan2004BPGraph000
Krogan2006BPGraph000
Tong2002BPGraph000
Uetz2000BPGraph10.000.010.01
Uetz2000BPGraph2000
Zhao2005BPGraph000
bpExperimentNames0.000.020.02
collectIntactPPIData20.49 0.0822.08
createBPList0.010.000.01
intActPPIData0.000.000.22
map2Systematic0.000.010.01
ppipred0.000.000.02
sWAC2Sys000
stochasticBaits0.020.000.02
tableList000
twTableAPMS0.010.000.09
twTableY2H000
viableProteins0.020.000.01
y2h000
y2hSysGW0.000.000.08