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hgu2beta7 1.2.2
Biocore Team c/o BioC user list
Snapshot Date: 2011-10-18 23:15:16 -0700 (Tue, 18 Oct 2011)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/hgu2beta7
Last Changed Rev: 782 / Revision: 1763
Last Changed Date: 2009-05-08 12:29:52 -0700 (Fri, 08 May 2009)
lamb1 Linux (openSUSE 11.3) / x86_64  OK  WARNINGS 
gewurz Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  WARNINGS  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK [ WARNINGS ] OK 

Summary

Package: hgu2beta7
Version: 1.2.2
Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch hgu2beta7_1.2.2.tar.gz
StartedAt: 2011-10-19 01:30:06 -0700 (Wed, 19 Oct 2011)
EndedAt: 2011-10-19 01:31:59 -0700 (Wed, 19 Oct 2011)
EllapsedTime: 113.0 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: hgu2beta7.Rcheck
Warnings: 2

Command output

* using log directory '/Users/biocbuild/bbs-2.8-data-experiment/meat/hgu2beta7.Rcheck'
* using R version 2.13.2 (2011-09-30)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'hgu2beta7/DESCRIPTION' ... OK
* this is package 'hgu2beta7' version '1.2.2'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'hgu2beta7' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  7.0Mb
  sub-directories of 1Mb or more:
    data   6.9Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... WARNING
Subdirectory 'data' contains no data sets.
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... NOTE
'library' or 'require' call not declared from: annotate
* checking contents of 'data' directory ... WARNING
Files not of a type allowed in a 'data' directory:
  Rdata.rdb Rdata.rds Rdata.rdx
Please use e.g. 'inst/extdata' for non-R data files
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking PDF version of manual ... OK

WARNING: There were 2 warnings, see
  '/Users/biocbuild/bbs-2.8-data-experiment/meat/hgu2beta7.Rcheck/00check.log'
for details

hgu2beta7.Rcheck/00install.out:

* installing *source* package 'hgu2beta7' ...
** R
** data
**  moving datasets to lazyload DB
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (hgu2beta7)

hgu2beta7.Rcheck/hgu2beta7-Ex.timings:

nameusersystemelapsed
hgu2beta7ACCNUM0.5620.0400.627
hgu2beta7CHR0.3190.0060.326
hgu2beta7CHRLENGTHS0.0010.0000.000
hgu2beta7CHRLOC0.3780.0110.389
hgu2beta7ENZYME0.3080.0080.322
hgu2beta7ENZYME2PROBE0.0240.0010.024
hgu2beta7GENENAME0.3810.0100.395
hgu2beta7GO2.5480.0912.701
hgu2beta7GO2ALLPROBES0.7050.0470.778
hgu2beta7GO2PROBE0.1150.0110.129
hgu2beta7GRIF0.2260.0090.237
hgu2beta7LOCUSID0.2290.0080.252
hgu2beta7MAP0.2500.0060.258
hgu2beta7OMIM0.2450.0060.252
hgu2beta7ORGANISM000
hgu2beta7PATH0.2320.0050.238
hgu2beta7PATH2PROBE0.0060.0010.007
hgu2beta7PMID0.7300.0160.764
hgu2beta7PMID2PROBE1.8850.0321.938
hgu2beta7REFSEQ0.7880.0110.820
hgu2beta7SUMFUNC0.3830.0230.412
hgu2beta7SYMBOL0.7420.0070.776
hgu2beta7UNIGENE0.3700.0120.389