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Package 302/467HostnameOS / ArchBUILDCHECKBUILD BIN
multtest 2.8.0
Katherine S. Pollard
Snapshot Date: 2011-10-20 07:20:33 -0700 (Thu, 20 Oct 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_8/madman/Rpacks/multtest
Last Changed Rev: 54808 / Revision: 59457
Last Changed Date: 2011-04-13 18:03:42 -0700 (Wed, 13 Apr 2011)
lamb1 Linux (openSUSE 11.3) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: multtest
Version: 2.8.0
Command: /home/biocbuild/bbs-2.8-bioc/R/bin/R CMD check --no-vignettes --timings multtest_2.8.0.tar.gz
StartedAt: 2011-10-20 13:40:57 -0700 (Thu, 20 Oct 2011)
EndedAt: 2011-10-20 13:42:01 -0700 (Thu, 20 Oct 2011)
EllapsedTime: 63.7 seconds
RetCode: 0
Status:  OK 
CheckDir: multtest.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.8-bioc/meat/multtest.Rcheck’
* using R version 2.13.2 (2011-09-30)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘multtest/DESCRIPTION’ ... OK
* this is package ‘multtest’ version ‘2.8.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘multtest’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking examples ... OK
* checking PDF version of manual ... OK

multtest.Rcheck/00install.out:

* installing *source* package ‘multtest’ ...
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.8-bioc/R/include  -I/usr/local/include   -DUSEDOUBLE -fpic  -g -O2 -c Rpack.c -o Rpack.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.8-bioc/R/include  -I/usr/local/include   -DUSEDOUBLE -fpic  -g -O2 -c VScount.c -o VScount.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.8-bioc/R/include  -I/usr/local/include   -DUSEDOUBLE -fpic  -g -O2 -c block_sampling_fixed.c -o block_sampling_fixed.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.8-bioc/R/include  -I/usr/local/include   -DUSEDOUBLE -fpic  -g -O2 -c bootloop.c -o bootloop.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.8-bioc/R/include  -I/usr/local/include   -DUSEDOUBLE -fpic  -g -O2 -c mt.c -o mt.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.8-bioc/R/include  -I/usr/local/include   -DUSEDOUBLE -fpic  -g -O2 -c pairt_sampling.c -o pairt_sampling.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.8-bioc/R/include  -I/usr/local/include   -DUSEDOUBLE -fpic  -g -O2 -c pairt_sampling_fixed.c -o pairt_sampling_fixed.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.8-bioc/R/include  -I/usr/local/include   -DUSEDOUBLE -fpic  -g -O2 -c random.c -o random.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.8-bioc/R/include  -I/usr/local/include   -DUSEDOUBLE -fpic  -g -O2 -c sampling.c -o sampling.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.8-bioc/R/include  -I/usr/local/include   -DUSEDOUBLE -fpic  -g -O2 -c sampling_fixed.c -o sampling_fixed.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.8-bioc/R/include  -I/usr/local/include   -DUSEDOUBLE -fpic  -g -O2 -c stat_func.c -o stat_func.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.8-bioc/R/include  -I/usr/local/include   -DUSEDOUBLE -fpic  -g -O2 -c stat_order.c -o stat_order.o
gcc -std=gnu99 -shared -L/usr/local/lib64 -o multtest.so Rpack.o VScount.o block_sampling_fixed.o bootloop.o mt.o pairt_sampling.o pairt_sampling_fixed.o random.o sampling.o sampling_fixed.o stat_func.o stat_order.o -lm -L/home/biocbuild/bbs-2.8-bioc/R/lib -lR
installing to /loc/home/biocbuild/bbs-2.8-bioc/meat/multtest.Rcheck/multtest/libs
** R
** data
** inst
** preparing package for lazy loading
Creating a new generic function for "as.list" in "multtest"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (multtest)

multtest.Rcheck/multtest-Ex.timings:

nameusersystemelapsed
EBMTP-class000
EBMTP0.2800.0080.285
Hsets0.3480.0000.348
MTP-class000
MTP0.4560.0000.458
boot.null0.0920.0000.093
corr.null0.0360.0000.036
fwer2gfwer4.3080.0084.358
get.index1.0520.0041.056
meanX0.0080.0000.008
mt.maxT5.0040.0165.025
mt.plot0.4120.0200.426
mt.rawp2adjp0.3040.0000.304
mt.reject0.3040.0000.304
mt.sample.teststat0.0480.0000.050
mt.teststat0.3960.0040.401
ss.maxT0.0000.0000.001
wapply0.0000.0000.001