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Package 286/467HostnameOS / ArchBUILDCHECKBUILD BIN
methVisual 1.4.0
Arie Zackay
Snapshot Date: 2011-10-20 07:20:33 -0700 (Thu, 20 Oct 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_8/madman/Rpacks/methVisual
Last Changed Rev: 54800 / Revision: 59457
Last Changed Date: 2011-04-13 15:27:35 -0700 (Wed, 13 Apr 2011)
lamb1 Linux (openSUSE 11.3) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  WARNINGS  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: methVisual
Version: 1.4.0
Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch methVisual_1.4.0.tar.gz
StartedAt: 2011-10-20 16:01:53 -0700 (Thu, 20 Oct 2011)
EndedAt: 2011-10-20 16:04:11 -0700 (Thu, 20 Oct 2011)
EllapsedTime: 138.5 seconds
RetCode: 0
Status:  OK 
CheckDir: methVisual.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.8-bioc/meat/methVisual.Rcheck'
* using R version 2.13.2 (2011-09-30)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'methVisual/DESCRIPTION' ... OK
* this is package 'methVisual' version '1.4.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'methVisual' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under inst/doc ... NOTE
  'qpdf' made some significant size reductions:
     compacted 'methVisual.pdf' from 352Kb to 210Kb
  consider running tools::compactPDF() on these files
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

methVisual.Rcheck/00install.out:

* installing *source* package 'methVisual' ...
** R
** data
** inst
** preparing package for lazy loading
Warning in rgl.init(initValue) : RGL: GLX extension missing on server
Warning in fun(...) : error in rgl_init
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
Warning messages:
1: In rgl.init(initValue) : RGL: GLX extension missing on server
2: In fun(...) : error in rgl_init

* DONE (methVisual)

methVisual.Rcheck/methVisual-Ex.timings:

nameusersystemelapsed
Cooccurrence0.8050.0290.860
MethAlignNW2.6540.0672.925
MethDataInput0.0550.0180.141
MethLollipops0.0150.0010.017
MethylQC2.1250.0462.324
cgInAlign0.0030.0010.004
cgMethFinder0.0010.0000.001
coversionGenom0.0000.0000.001
findNonAligned0.0030.0020.006
heatMapMeth0.1220.0050.127
makeDataMethGFF0.4890.0300.755
makeLocalExpDir0.0480.0190.169
makeTabFilePath0.0060.0020.038
matrixSNP0.4590.0180.517
methCA0.0200.0030.024
methData0.0030.0010.003
methFisherTest0.0540.0030.059
methWhitneyUTest0.0070.0010.008
plotAbsMethyl0.0040.0010.006
plotMatrixSNP0.9600.0261.003
readBisulfFASTA0.0510.0180.076
selectRefSeq0.0480.0200.109