Package: goProfiles

Version: 1.14.0

Command: /home/biocbuild/bbs-2.8-bioc/R/bin/R CMD check --no-vignettes --timings goProfiles_1.14.0.tar.gz

StartedAt: 2011-10-20 13:00:38 -0700 (Thu, 20 Oct 2011)

EndedAt: 2011-10-20 13:02:04 -0700 (Thu, 20 Oct 2011)

EllapsedTime: 85.9 seconds

RetCode: 0

Status:  OK

CheckDir: goProfiles.Rcheck

Warnings: 0

* using log directory ‘/loc/home/biocbuild/bbs-2.8-bioc/meat/goProfiles.Rcheck’
* using R version 2.13.2 (2011-09-30)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘goProfiles/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘goProfiles’ version ‘1.14.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘goProfiles’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package ‘goProfiles’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
Warning: value of 'results' option should be lowercase
** testing if installed package can be loaded

* DONE (goProfiles)

name	user	system	elapsed
CD4ids	0.012	0.004	0.016
GOTermsList	0.000	0.000	0.001
basicProfile	3.748	0.060	3.896
compSummary	2.180	0.024	2.205
compareGOProfiles	2.116	0.008	2.123
compareGeneLists	9.149	0.064	9.337
compareProfilesLists	0.000	0.000	0.001
contractedProfile	0.852	0.016	0.895
conversionFunctions	0.036	0.000	0.038
drosophila	0.000	0.004	0.005
equivSummary	0	0	0
equivalentGOProfiles	1.676	0.008	1.704
expandedLevel	1.864	0.016	1.935
expandedProfile	0.372	0.004	0.443
fisherGOProfiles	5.372	0.056	5.439
fitGOProfile	0	0	0
hugoIds	0.020	0.000	0.017
mergeProfilesLists	3.909	0.028	3.937
ngenes	0.684	0.012	0.700
omimIds	0.004	0.000	0.006
plotProfiles	4.148	0.024	4.190
printProfiles	3.720	0.020	3.747
prostateIds	0.008	0.000	0.006