Package: flowPlots

Version: 1.0.0

Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch flowPlots_1.0.0.tar.gz

StartedAt: 2011-10-20 14:47:45 -0700 (Thu, 20 Oct 2011)

EndedAt: 2011-10-20 14:48:47 -0700 (Thu, 20 Oct 2011)

EllapsedTime: 62.0 seconds

RetCode: 0

Status:  OK

CheckDir: flowPlots.Rcheck

Warnings: 0

* using log directory '/Users/biocbuild/bbs-2.8-bioc/meat/flowPlots.Rcheck'
* using R version 2.13.2 (2011-09-30)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'flowPlots/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'flowPlots' version '1.0.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'flowPlots' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under inst/doc ... NOTE
  'qpdf' made some significant size reductions:
     compacted 'flowPlots.pdf' from 464Kb to 232Kb
  consider running tools::compactPDF() on these files
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'flowPlots' ...
** R
** data
**  moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (flowPlots)

name	user	system	elapsed
GroupListBoxplot	0.157	0.005	0.165
StackedData-class	14.948	0.177	15.250
adultsNeonates	0.002	0.001	0.003
computeMarginalData-methods	3.644	0.045	3.713
computeMarkers-methods	0.001	0.000	0.001
computePFDData-methods	3.086	0.039	3.147
computePFDGroupStatsList	0.450	0.021	0.481
computePFDPartsData-methods	4.249	0.049	4.334
computeProfileData-methods	4.120	0.043	4.228
legendPFDStatsGroupNames	0.232	0.007	0.241
makeBarplotData	0.017	0.001	0.018
makeDataList	0.090	0.001	0.090
makeTernaryData	0.233	0.007	0.246
marginalDF	0.001	0.001	0.002
marginalData-methods	0.003	0.001	0.004
markerMatrix	0.002	0.001	0.002
markers-methods	0.002	0.000	0.003
pfdDF	0.001	0.000	0.002
pfdData-methods	0.003	0.001	0.003
pfdPartsData-methods	0.005	0.001	0.006
pfdPartsList	0.001	0.001	0.002
profileDF	0.002	0.001	0.003
profileData-methods	0.005	0.001	0.005
readStackedData-methods	0.059	0.005	0.064
stackedData-methods	0.100	0.013	0.113