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Package 148/467HostnameOS / ArchBUILDCHECKBUILD BIN
flowCore 1.18.0
F. Hahne
Snapshot Date: 2011-10-20 07:20:33 -0700 (Thu, 20 Oct 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_8/madman/Rpacks/flowCore
Last Changed Rev: 54800 / Revision: 59457
Last Changed Date: 2011-04-13 15:27:35 -0700 (Wed, 13 Apr 2011)
lamb1 Linux (openSUSE 11.3) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
gewurz Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  WARNINGS  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: flowCore
Version: 1.18.0
Command: E:\biocbld\bbs-2.8-bioc\R\bin\R.exe CMD check --no-vignettes --timings --no-multiarch flowCore_1.18.0.tar.gz
StartedAt: 2011-10-20 14:59:23 -0700 (Thu, 20 Oct 2011)
EndedAt: 2011-10-20 15:02:24 -0700 (Thu, 20 Oct 2011)
EllapsedTime: 181.5 seconds
RetCode: 0
Status:  OK  
CheckDir: flowCore.Rcheck
Warnings: 0

Command output

* using log directory 'E:/biocbld/bbs-2.8-bioc/meat/flowCore.Rcheck'
* using R version 2.13.2 (2011-09-30)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'flowCore/DESCRIPTION' ... OK
* this is package 'flowCore' version '1.18.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'flowCore' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 18.1Mb
  sub-directories of 1Mb or more:
    data      8.0Mb
    doc       7.2Mb
    extdata   1.1Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

flowCore.Rcheck/00install.out:

* installing *source* package 'flowCore' ...
** libs
g++ -I"E:/biocbld/BBS-2˜1.8-B/R/include"          -O2 -Wall  -c FastLogicle.cpp -o FastLogicle.o
g++ -I"E:/biocbld/BBS-2˜1.8-B/R/include"          -O2 -Wall  -c Logicle.cpp -o Logicle.o
gcc -I"E:/biocbld/BBS-2˜1.8-B/R/include"          -O3 -Wall  -std=gnu99 -c biexponential.c -o biexponential.o
gcc -I"E:/biocbld/BBS-2˜1.8-B/R/include"          -O3 -Wall  -std=gnu99 -c inPolygon.c -o inPolygon.o
gcc -I"E:/biocbld/BBS-2˜1.8-B/R/include"          -O3 -Wall  -std=gnu99 -c inPolytope.c -o inPolytope.o
gcc -I"E:/biocbld/BBS-2˜1.8-B/R/include"          -O3 -Wall  -std=gnu99 -c init.c -o init.o
g++ -I"E:/biocbld/BBS-2˜1.8-B/R/include"          -O2 -Wall  -c logicleTransform.cpp -o logicleTransform.o
g++ -shared -s -static-libgcc -o flowCore.dll tmp.def FastLogicle.o Logicle.o biexponential.o inPolygon.o inPolytope.o init.o logicleTransform.o -LE:/biocbld/BBS-2˜1.8-B/R/bin/i386 -lR
installing to E:/biocbld/bbs-2.8-bioc/meat/flowCore.Rcheck/flowCore/libs/i386
** R
** data
** inst
** preparing package for lazy loading
Scalable Robust Estimators with High Breakdown Point (version 1.3-01)
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
Scalable Robust Estimators with High Breakdown Point (version 1.3-01)

* DONE (flowCore)

flowCore.Rcheck/flowCore-Ex.timings:

nameusersystemelapsed
EHtrans-class0.180.000.17
Subset-methods1.370.011.39
actionItem-class000
arcsinhTransform0.170.000.17
asinht-class0.070.000.06
biexponentialTransform14.85 0.2715.19
boundaryFilter-class0.290.000.28
characterOrTransformation-class000
coerce0.120.000.13
compensateActionItem-class000
compensateView-class000
compensatedParameter-class0.310.010.32
compensation-class0.640.000.64
curv1Filter-class0.570.020.58
curv2Filter-class3.090.013.14
dg1polynomial-class0.050.020.07
each_col-methods0.080.000.07
ellipsoidGate0.090.020.11
exponential-class0.060.000.07
expressionFilter-class0.100.010.15
fcReference-class000
filter-methods1.680.021.72
filter-on-methods0.250.000.25
filterList-class000
filterResult-class0.020.000.02
filterResultList-class2.300.062.37
filterSet-class0.060.000.06
filterSummary-class0.250.000.25
filterSummaryList-class2.010.032.05
flowFrame-class5.660.055.77
flowSet-class5.030.015.06
fsApply0.30.00.3
gateActionItem-class0.010.000.01
gateView-class000
hyperlog-class1.80.01.8
identifier-methods0.050.020.06
inverseLogicleTransform1.330.001.34
invsplitscale-class0.070.000.11
keyword-methods1.520.031.57
kmeansFilter0.330.000.32
linearTransform0.080.000.08
lnTransform4.060.024.16
logTransform0.190.000.19
logarithm-class0.040.000.04
logicalFilterResult-class0.020.000.02
logicleTransform1.400.001.41
manyFilterResult-class000
multipleFilterResult-class000
norm2Filter-class0.270.000.31
normalizeActionItem-class000
normalizeView-class000
parameters-methods0.050.000.04
polygonGate0.120.000.15
quadGate0.360.000.35
quadratic-class0.060.000.07
quadraticTransform0.080.000.08
ratio-class0.060.000.06
read.FCS0.100.000.09
read.FCSheader0.000.010.02
read.flowSet0.200.000.22
rectangleGate0.220.000.21
sampleFilter-class0.110.000.11
scaleTransform0.080.000.08
singleParameterTransform-class000
sinht-class0.060.000.06
split-methods2.160.002.20
splitScaleTransform3.750.033.82
splitscale-class0.170.000.17
squareroot-class0.060.000.06
subsettingActionItem-class000
subsettingView-class000
timeFilter-class3.450.033.52
transform-class000
transformActionItem-class000
transformFilter-class0.210.000.20
transformList-class1.290.021.33
transformMap-class000
transformView-class000
truncateTransform0.080.000.08
unitytransform-class0.040.000.06
view-class000
workFlow-class000
write.FCS0.10.00.1
write.flowSet1.690.001.72