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Package 147/467HostnameOS / ArchBUILDCHECKBUILD BIN
flowClust 2.10.0
Raphael Gottardo
Snapshot Date: 2011-10-20 07:20:33 -0700 (Thu, 20 Oct 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_8/madman/Rpacks/flowClust
Last Changed Rev: 56241 / Revision: 59457
Last Changed Date: 2011-06-16 15:04:11 -0700 (Thu, 16 Jun 2011)
lamb1 Linux (openSUSE 11.3) / x86_64  OK  WARNINGS 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  WARNINGS  OK 
gewurz Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK [ WARNINGS ] OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  WARNINGS  OK 

Summary

Package: flowClust
Version: 2.10.0
Command: D:\biocbld\bbs-2.8-bioc\R\bin\R.exe CMD check --no-vignettes --timings --no-multiarch flowClust_2.10.0.tar.gz
StartedAt: 2011-10-20 14:11:52 -0700 (Thu, 20 Oct 2011)
EndedAt: 2011-10-20 14:13:33 -0700 (Thu, 20 Oct 2011)
EllapsedTime: 100.7 seconds
RetCode: 0
Status:  WARNINGS  
CheckDir: flowClust.Rcheck
Warnings: 3

Command output

* using log directory 'D:/biocbld/bbs-2.8-bioc/meat/flowClust.Rcheck'
* using R version 2.13.2 (2011-09-30)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'flowClust/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'flowClust' version '2.10.0'
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Package which this enhances but not available for checking: multicore
* checking if this is a source package ... OK
* checking whether package 'flowClust' can be installed ... WARNING
Found the following significant warnings:
  Warning: Class "Ulist" is defined (with package slot 'rrcov') but no metadata object found to revise subclass information---not exported?  Making a copy in package 'flowClust'
  Warning: Class "Uvector" is defined (with package slot 'rrcov') but no metadata object found to revise subclass information---not exported?  Making a copy in package 'flowClust'
See 'D:/biocbld/bbs-2.8-bioc/meat/flowClust.Rcheck/00install.out' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
flowClust: no visible global function definition for 'mclapply'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented S4 classes:
  Ulist Uvector
All user-level objects in a package (including S4 classes and methods)
should have documentation entries.
See the chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... WARNING
Package vignette(s) without corresponding PDF:
   flowClust.Rnw

* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There were 3 warnings, see
  'D:/biocbld/bbs-2.8-bioc/meat/flowClust.Rcheck/00check.log'
for details

flowClust.Rcheck/00install.out:

* installing *source* package 'flowClust' ...

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
x86_64-w64-mingw32-gcc -I"D:/biocbld/BBS-2˜1.8-B/R/include"       -I/src/include -IC:/GSL/x64/include   -O2 -Wall  -std=gnu99 -c BoxCox.c -o BoxCox.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/BBS-2˜1.8-B/R/include"       -I/src/include -IC:/GSL/x64/include   -O2 -Wall  -std=gnu99 -c Nu.c -o Nu.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/BBS-2˜1.8-B/R/include"       -I/src/include -IC:/GSL/x64/include   -O2 -Wall  -std=gnu99 -c flowClust.c -o flowClust.o
flowClust.c: In function 'flowClust':
flowClust.c:49:21: warning: 's' may be used uninitialized in this function
flowClust.c:49:25: warning: 's2' may be used uninitialized in this function
flowClust.c:51:23: warning: 's3' may be used uninitialized in this function
x86_64-w64-mingw32-gcc -I"D:/biocbld/BBS-2˜1.8-B/R/include"       -I/src/include -IC:/GSL/x64/include   -O2 -Wall  -std=gnu99 -c flowClustGaussian.c -o flowClustGaussian.o
flowClustGaussian.c: In function 'flowClustGaussian':
flowClustGaussian.c:33:21: warning: 's' may be used uninitialized in this function
x86_64-w64-mingw32-gcc -I"D:/biocbld/BBS-2˜1.8-B/R/include"       -I/src/include -IC:/GSL/x64/include   -O2 -Wall  -std=gnu99 -c ranMVNT.c -o ranMVNT.o
x86_64-w64-mingw32-gcc -shared -s -static-libgcc -o flowClust.dll tmp.def BoxCox.o Nu.o flowClust.o flowClustGaussian.o ranMVNT.o -LC:/GSL/x64/lib -lgsl -lgslcblas -lm -LD:/biocbld/BBS-2˜1.8-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-2.8-bioc/meat/flowClust.Rcheck/flowClust/libs/x64
** R
** data
** inst
** preparing package for lazy loading
Scalable Robust Estimators with High Breakdown Point (version 1.3-01)
Warning: Class "Ulist" is defined (with package slot 'rrcov') but no metadata object found to revise subclass information---not exported?  Making a copy in package 'flowClust'
Warning: Class "Uvector" is defined (with package slot 'rrcov') but no metadata object found to revise subclass information---not exported?  Making a copy in package 'flowClust'
** help
*** installing help indices
** building package indices ...
Warning: value of 'results' option should be lowercase
Warning: value of 'results' option should be lowercase
** testing if installed package can be loaded
Scalable Robust Estimators with High Breakdown Point (version 1.3-01)

* DONE (flowClust)

flowClust.Rcheck/flowClust-Ex.timings:

nameusersystemelapsed
SimulateMixture0.030.000.03
box0.150.000.16
flowClust9.520.019.64
tmixFilter9.660.009.66