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Package 77/467HostnameOS / ArchBUILDCHECKBUILD BIN
cellHTS2 2.16.0
Florian Hahne
Snapshot Date: 2011-10-20 07:20:33 -0700 (Thu, 20 Oct 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_8/madman/Rpacks/cellHTS2
Last Changed Rev: 54800 / Revision: 59457
Last Changed Date: 2011-04-13 15:27:35 -0700 (Wed, 13 Apr 2011)
lamb1 Linux (openSUSE 11.3) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ WARNINGS ] OK 
gewurz Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  WARNINGS  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: cellHTS2
Version: 2.16.0
Command: E:\biocbld\bbs-2.8-bioc\R\bin\R.exe CMD check --no-vignettes --timings --no-multiarch cellHTS2_2.16.0.tar.gz
StartedAt: 2011-10-20 14:27:49 -0700 (Thu, 20 Oct 2011)
EndedAt: 2011-10-20 14:32:14 -0700 (Thu, 20 Oct 2011)
EllapsedTime: 265.0 seconds
RetCode: 0
Status:  WARNINGS  
CheckDir: cellHTS2.Rcheck
Warnings: 1

Command output

* using log directory 'E:/biocbld/bbs-2.8-bioc/meat/cellHTS2.Rcheck'
* using R version 2.13.2 (2011-09-30)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'cellHTS2/DESCRIPTION' ... OK
* this is package 'cellHTS2' version '2.16.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'cellHTS2' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 52.4Mb
  sub-directories of 1Mb or more:
    data     1.2Mb
    doc     47.7Mb
    KcViab   2.0Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running 'test.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... WARNING
Package vignette(s) without corresponding PDF:
   cellhts2Complete.Rnw

* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning, see
  'E:/biocbld/bbs-2.8-bioc/meat/cellHTS2.Rcheck/00check.log'
for details

cellHTS2.Rcheck/00install.out:

* installing *source* package 'cellHTS2' ...
** R
** data
** inst
** preparing package for lazy loading
locfit 1.5-6 	 2010-01-20 
Scalable Robust Estimators with High Breakdown Point (version 1.3-01)
Creating a new generic function for "lines" in "cellHTS2"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
locfit 1.5-6 	 2010-01-20 
Scalable Robust Estimators with High Breakdown Point (version 1.3-01)

* DONE (cellHTS2)

cellHTS2.Rcheck/cellHTS2-Ex.timings:

nameusersystemelapsed
Bscore1.940.021.98
ROC-class0.280.000.28
ROC1.130.001.31
annotate0.860.000.87
bdgpbiomart0.370.000.38
buildCellHTS20.240.010.25
cellHTS-class0.980.001.05
configurationAsScreenPlot0.630.000.65
configure0.680.000.69
convertOldCellHTS1.070.001.08
convertWellCoordinates000
data-KcViab0.140.020.17
data-KcViabSmall0.010.000.02
data-dualCh0.020.000.01
data-oldKcViabSmall0.000.000.02
getDynamicRange0.610.000.61
getEnVisionRawData0.040.000.11
getMeasureRepAgreement0.630.010.64
getTopTable1.480.001.48
getZfactor0.360.000.38
imageScreen0.960.000.95
normalizePlates1.390.001.39
oneRowPerId0.010.000.02
plotSpatialEffects1.250.001.25
readHTAnalystData1.060.001.06
readPlateList0.770.000.77
scoreReplicates0.950.000.95
scores2calls1.030.001.03
setSettings0.020.000.02
spatialNormalization1.390.001.40
summarizeChannels1.690.001.71
summarizeReplicates1.140.001.14
templateDescriptionFile000
updateCellHTS0.010.000.02
write.tabdel0.050.000.04
writeReport0.020.000.02
writeTab0.010.000.02