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Package 37/467HostnameOS / ArchBUILDCHECKBUILD BIN
aroma.light 1.20.0
Henrik Bengtsson
Snapshot Date: 2011-10-20 07:20:33 -0700 (Thu, 20 Oct 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_8/madman/Rpacks/aroma.light
Last Changed Rev: 54870 / Revision: 59457
Last Changed Date: 2011-04-14 18:07:57 -0700 (Thu, 14 Apr 2011)
lamb1 Linux (openSUSE 11.3) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK [ WARNINGS ] OK 

Summary

Package: aroma.light
Version: 1.20.0
Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch aroma.light_1.20.0.tar.gz
StartedAt: 2011-10-20 13:26:10 -0700 (Thu, 20 Oct 2011)
EndedAt: 2011-10-20 13:28:24 -0700 (Thu, 20 Oct 2011)
EllapsedTime: 134.3 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: aroma.light.Rcheck
Warnings: 1

Command output

* using log directory '/Users/biocbuild/bbs-2.8-bioc/meat/aroma.light.Rcheck'
* using R version 2.13.2 (2011-09-30)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'aroma.light/DESCRIPTION' ... OK
* this is package 'aroma.light' version '1.20.0'
* package encoding: latin1
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'aroma.light' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... NOTE
'library' or 'require' call not declared from: R.basic
* checking examples ... WARNING
checking a package with encoding  'latin1'  in an ASCII locale

 OK
* checking PDF version of manual ... OK

WARNING: There was 1 warning, see
  '/Users/biocbuild/bbs-2.8-bioc/meat/aroma.light.Rcheck/00check.log'
for details

aroma.light.Rcheck/00install.out:

* installing *source* package 'aroma.light' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
Warning messages:
1: In value[[3L]](cond) :
  Multiple installations of package 'aroma.light' was found. Using the first. Paths to all installations: /Users/biocbuild/bbs-2.8-bioc/meat/aroma.light.Rcheck, /Library/Frameworks/R.framework/Versions/2.13/Resources/library
2: 'DESCRIPTION' file has 'Encoding' field and re-encoding is not possible 

* DONE (aroma.light)

aroma.light.Rcheck/aroma.light-Ex.timings:

nameusersystemelapsed
backtransformAffine.matrix0.0080.0010.011
backtransformPrincipalCurve.matrix1.0670.0261.337
calibrateMultiscan.matrix000
callNaiveGenotypes.numeric0.7750.1040.914
distanceBetweenLines0.0250.0020.028
findPeaksAndValleys.density0.0700.0150.096
fitPrincipalCurve.matrix0.7450.0180.770
fitXYCurve.matrix0.0960.0030.102
iwpca.matrix0.0180.0020.023
likelihood.smooth.spline0.3060.0190.333
medianPolish.matrix0.0090.0010.010
normalizeAffine.matrix28.423 0.53530.075
normalizeCurveFit.matrix28.389 0.50829.643
normalizeDifferencesToAverage.list0.0270.0020.029
normalizeFragmentLength1.3860.0481.441
normalizeQuantileRank.list0.2030.0590.263
normalizeQuantileRank.matrix0.1330.0340.170
normalizeQuantileSpline.matrix2.6790.2222.948
normalizeTumorBoost.numeric0.1760.0230.213
robustSmoothSpline0.0830.0030.102
sampleCorrelations.matrix0.2170.0050.247
sampleTuples0.0020.0000.001
weightedMedian5.7810.4636.373
wpca.matrix0.1120.0060.118