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Package 37/467HostnameOS / ArchBUILDCHECKBUILD BIN
aroma.light 1.20.0
Henrik Bengtsson
Snapshot Date: 2011-10-20 07:20:33 -0700 (Thu, 20 Oct 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_8/madman/Rpacks/aroma.light
Last Changed Rev: 54870 / Revision: 59457
Last Changed Date: 2011-04-14 18:07:57 -0700 (Thu, 14 Apr 2011)
lamb1 Linux (openSUSE 11.3) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK [ OK ] OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  WARNINGS  OK 

Summary

Package: aroma.light
Version: 1.20.0
Command: D:\biocbld\bbs-2.8-bioc\R\bin\R.exe CMD check --no-vignettes --timings --no-multiarch aroma.light_1.20.0.tar.gz
StartedAt: 2011-10-20 13:01:11 -0700 (Thu, 20 Oct 2011)
EndedAt: 2011-10-20 13:02:24 -0700 (Thu, 20 Oct 2011)
EllapsedTime: 73.0 seconds
RetCode: 0
Status:  OK  
CheckDir: aroma.light.Rcheck
Warnings: 0

Command output

* using log directory 'D:/biocbld/bbs-2.8-bioc/meat/aroma.light.Rcheck'
* using R version 2.13.2 (2011-09-30)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'aroma.light/DESCRIPTION' ... OK
* this is package 'aroma.light' version '1.20.0'
* package encoding: latin1
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'aroma.light' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... NOTE
'library' or 'require' call not declared from: R.basic
* checking examples ... OK
* checking PDF version of manual ... OK

aroma.light.Rcheck/00install.out:

* installing *source* package 'aroma.light' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (aroma.light)

aroma.light.Rcheck/aroma.light-Ex.timings:

nameusersystemelapsed
backtransformAffine.matrix000
backtransformPrincipalCurve.matrix0.720.010.74
calibrateMultiscan.matrix000
callNaiveGenotypes.numeric0.690.000.69
distanceBetweenLines0.020.000.01
findPeaksAndValleys.density0.060.000.06
fitPrincipalCurve.matrix0.550.020.57
fitXYCurve.matrix0.060.000.06
iwpca.matrix0.020.000.02
likelihood.smooth.spline0.210.000.20
medianPolish.matrix0.010.000.02
normalizeAffine.matrix15.42 0.0015.42
normalizeCurveFit.matrix15.04 0.0315.08
normalizeDifferencesToAverage.list0.030.000.03
normalizeFragmentLength0.930.050.99
normalizeQuantileRank.list0.180.000.17
normalizeQuantileRank.matrix0.070.000.08
normalizeQuantileSpline.matrix1.880.011.89
normalizeTumorBoost.numeric0.140.020.15
robustSmoothSpline0.050.000.05
sampleCorrelations.matrix0.140.000.14
sampleTuples000
weightedMedian3.900.114.02
wpca.matrix0.110.000.10