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Package 19/467HostnameOS / ArchBUILDCHECKBUILD BIN
affyILM 1.4.0
Myriam Kroll and Fabrice Berger
Snapshot Date: 2011-10-20 07:20:33 -0700 (Thu, 20 Oct 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_8/madman/Rpacks/affyILM
Last Changed Rev: 56241 / Revision: 59457
Last Changed Date: 2011-06-16 15:04:11 -0700 (Thu, 16 Jun 2011)
lamb1 Linux (openSUSE 11.3) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
gewurz Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  WARNINGS  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: affyILM
Version: 1.4.0
Command: E:\biocbld\bbs-2.8-bioc\R\bin\R.exe CMD check --no-vignettes --timings --no-multiarch affyILM_1.4.0.tar.gz
StartedAt: 2011-10-20 13:51:12 -0700 (Thu, 20 Oct 2011)
EndedAt: 2011-10-20 13:53:23 -0700 (Thu, 20 Oct 2011)
EllapsedTime: 131.2 seconds
RetCode: 0
Status:  OK  
CheckDir: affyILM.Rcheck
Warnings: 0

Command output

* using log directory 'E:/biocbld/bbs-2.8-bioc/meat/affyILM.Rcheck'
* using R version 2.13.2 (2011-09-30)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'affyILM/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'affyILM' version '1.4.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'affyILM' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

affyILM.Rcheck/00install.out:

* installing *source* package 'affyILM' ...

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
gcc -I"E:/biocbld/BBS-2˜1.8-B/R/include"       -I/src/include -IC:/GSL/i386/include   -O3 -Wall  -std=gnu99 -c affyilm.c -o affyilm.o
gcc -I"E:/biocbld/BBS-2˜1.8-B/R/include"       -I/src/include -IC:/GSL/i386/include   -O3 -Wall  -std=gnu99 -c enval.c -o enval.o
gcc -I"E:/biocbld/BBS-2˜1.8-B/R/include"       -I/src/include -IC:/GSL/i386/include   -O3 -Wall  -std=gnu99 -c get_backg.c -o get_backg.o
gcc -I"E:/biocbld/BBS-2˜1.8-B/R/include"       -I/src/include -IC:/GSL/i386/include   -O3 -Wall  -std=gnu99 -c init.c -o init.o
gcc -I"E:/biocbld/BBS-2˜1.8-B/R/include"       -I/src/include -IC:/GSL/i386/include   -O3 -Wall  -std=gnu99 -c multAB.c -o multAB.o
gcc -I"E:/biocbld/BBS-2˜1.8-B/R/include"       -I/src/include -IC:/GSL/i386/include   -O3 -Wall  -std=gnu99 -c multXty.c -o multXty.o
gcc -I"E:/biocbld/BBS-2˜1.8-B/R/include"       -I/src/include -IC:/GSL/i386/include   -O3 -Wall  -std=gnu99 -c points.c -o points.o
gcc -shared -s -static-libgcc -o affyILM.dll tmp.def affyilm.o enval.o get_backg.o init.o multAB.o multXty.o points.o -LC:/GSL/i386/lib -lgsl -lgslcblas -lm -LE:/biocbld/BBS-2˜1.8-B/R/bin/i386 -lR
installing to E:/biocbld/bbs-2.8-bioc/meat/affyILM.Rcheck/affyILM/libs/i386
** R
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (affyILM)

affyILM.Rcheck/affyILM-Ex.timings:

nameusersystemelapsed
ILM-class000
ilm-methods 9.21 0.6012.22
ilm10.54 0.0811.00
plotIntens7.100.077.28