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Package 300/467HostnameOS / ArchBUILDCHECKBUILD BIN
Mulcom 1.2.5
Claudio Isella
Snapshot Date: 2011-10-20 07:20:33 -0700 (Thu, 20 Oct 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_8/madman/Rpacks/Mulcom
Last Changed Rev: 57659 / Revision: 59457
Last Changed Date: 2011-08-25 00:51:19 -0700 (Thu, 25 Aug 2011)
lamb1 Linux (openSUSE 11.3) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
gewurz Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  WARNINGS  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: Mulcom
Version: 1.2.5
Command: E:\biocbld\bbs-2.8-bioc\R\bin\R.exe CMD check --no-vignettes --timings --no-multiarch Mulcom_1.2.5.tar.gz
StartedAt: 2011-10-20 16:03:17 -0700 (Thu, 20 Oct 2011)
EndedAt: 2011-10-20 16:05:03 -0700 (Thu, 20 Oct 2011)
EllapsedTime: 106.6 seconds
RetCode: 0
Status:  OK  
CheckDir: Mulcom.Rcheck
Warnings: 0

Command output

* using log directory 'E:/biocbld/bbs-2.8-bioc/meat/Mulcom.Rcheck'
* using R version 2.13.2 (2011-09-30)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'Mulcom/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'Mulcom' version '1.2.5'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'Mulcom' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

Mulcom.Rcheck/00install.out:

* installing *source* package 'Mulcom' ...
** libs
g++ -I"E:/biocbld/BBS-2˜1.8-B/R/include"          -O2 -Wall  -c mulLibs.cc -o mulLibs.o
mulLibs.cc: In function 'void Single_SimulationC(double*, double*, double*, double*, double*, double*, int*, int*, int*, int*, int*)':
mulLibs.cc:708:33: warning: statement has no effect
mulLibs.cc: In function 'void Complete_SimulationC(double*, int*, double*, double*, int*, int*, int*, int*, int*)':
mulLibs.cc:1022:50: warning: comparison between signed and unsigned integer expressions
mulLibs.cc:1023:68: warning: comparison between signed and unsigned integer expressions
g++ -shared -s -static-libgcc -o Mulcom.dll tmp.def mulLibs.o -LE:/biocbld/BBS-2˜1.8-B/R/bin/i386 -lR
installing to E:/biocbld/bbs-2.8-bioc/meat/Mulcom.Rcheck/Mulcom/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (Mulcom)

Mulcom.Rcheck/Mulcom-Ex.timings:

nameusersystemelapsed
MULCOM-class0.620.030.67
MULCOM_P0.430.000.42
mulCAND2.350.002.36
mulCalc0.360.000.37
mulDELTA0.190.000.19
mulDiff1.640.041.67
mulFSG1.860.001.86
mulIndex0.190.000.19
mulInt14.23 0.8115.13
mulOpt14.63 0.6115.29
mulOptPars1.550.001.55
mulOptPlot3.400.083.48
mulParOpt3.350.073.44
mulPerm1.450.001.49
mulPermC0.170.000.17
mulScores0.330.000.36