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Package 273/467HostnameOS / ArchBUILDCHECKBUILD BIN
MassArray 1.4.0
Reid F. Thompson
Snapshot Date: 2011-10-20 07:20:33 -0700 (Thu, 20 Oct 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_8/madman/Rpacks/MassArray
Last Changed Rev: 56142 / Revision: 59457
Last Changed Date: 2011-06-13 11:59:45 -0700 (Mon, 13 Jun 2011)
lamb1 Linux (openSUSE 11.3) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK [ WARNINGS ] OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: MassArray
Version: 1.4.0
Command: D:\biocbld\bbs-2.8-bioc\R\bin\R.exe CMD check --no-vignettes --timings --no-multiarch MassArray_1.4.0.tar.gz
StartedAt: 2011-10-20 15:17:04 -0700 (Thu, 20 Oct 2011)
EndedAt: 2011-10-20 15:18:09 -0700 (Thu, 20 Oct 2011)
EllapsedTime: 65.5 seconds
RetCode: 0
Status:  WARNINGS  
CheckDir: MassArray.Rcheck
Warnings: 1

Command output

* using log directory 'D:/biocbld/bbs-2.8-bioc/meat/MassArray.Rcheck'
* using R version 2.13.2 (2011-09-30)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'MassArray/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'MassArray' version '1.4.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'MassArray' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... WARNING
Package vignette(s) without corresponding PDF:
   MassArray.Rnw

* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning, see
  'D:/biocbld/bbs-2.8-bioc/meat/MassArray.Rcheck/00check.log'
for details

MassArray.Rcheck/00install.out:

* installing *source* package 'MassArray' ...
** R
** data
**  moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (MassArray)

MassArray.Rcheck/MassArray-Ex.timings:

nameusersystemelapsed
MassArray.example.data0.020.000.02
MassArrayData-class000
MassArrayFragment-class000
MassArrayPeak-class000
MassArraySpectrum-class000
ampliconPrediction2.440.002.44
analyzeCpGs0.260.000.26
bisConvert000
calcMW000
calcMeth0.020.000.02
calcPercentAdduct0.080.000.08
calcPercentConversion0.060.000.06
combine5.30.05.3
convControl0.030.000.03
countCGs000
createWiggle0.010.000.01
estimatePrimerDimer0.110.000.11
evaluateSNPs27.28 0.0227.33
expandSequence000
findCollisions000
findFragments0.020.000.02
findPeaks000
identifySNPs0.030.000.03
inSilicoFragmentation0.020.000.01
isAssayable000
numCollisions000
plot.MassArrayData0.030.000.04
position0.010.000.01
revComplement000
rnaDigest0.020.000.02
samples0.020.000.01
sum.MassArraySpectrum0.540.000.55