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Package 186/467HostnameOS / ArchBUILDCHECKBUILD BIN
GenomeGraphs 1.12.0
Steffen Durinck
Snapshot Date: 2011-10-20 07:20:33 -0700 (Thu, 20 Oct 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_8/madman/Rpacks/GenomeGraphs
Last Changed Rev: 54800 / Revision: 59457
Last Changed Date: 2011-04-13 15:27:35 -0700 (Wed, 13 Apr 2011)
lamb1 Linux (openSUSE 11.3) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
gewurz Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  WARNINGS  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: GenomeGraphs
Version: 1.12.0
Command: E:\biocbld\bbs-2.8-bioc\R\bin\R.exe CMD check --no-vignettes --timings --no-multiarch GenomeGraphs_1.12.0.tar.gz
StartedAt: 2011-10-20 15:15:18 -0700 (Thu, 20 Oct 2011)
EndedAt: 2011-10-20 15:17:32 -0700 (Thu, 20 Oct 2011)
EllapsedTime: 134.7 seconds
RetCode: 0
Status:  OK  
CheckDir: GenomeGraphs.Rcheck
Warnings: 0

Command output

* using log directory 'E:/biocbld/bbs-2.8-bioc/meat/GenomeGraphs.Rcheck'
* using R version 2.13.2 (2011-09-30)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'GenomeGraphs/DESCRIPTION' ... OK
* this is package 'GenomeGraphs' version '1.12.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'GenomeGraphs' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

GenomeGraphs.Rcheck/00install.out:

* installing *source* package 'GenomeGraphs' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (GenomeGraphs)

GenomeGraphs.Rcheck/GenomeGraphs-Ex.timings:

nameusersystemelapsed
AnnotationTrack-class000
BaseTrack-class000
DisplayPars-class000
DisplayPars0.440.015.19
ExonArray-class000
Gene-class000
GeneModel-class0.120.000.12
GeneRegion-class000
GenericArray-class000
GenomeAxis-class000
HighlightRegion-class000
Ideogram-class000
ImplementsTrackOverlay-class000
Legend-class000
MappedRead-class000
Overlay-class000
RectangleOverlay-class0.020.000.02
Segmentation-class000
Smoothing-class000
TextOverlay-class000
Title-class000
TrackOverlay-class000
Transcript-class000
TranscriptRegion-class000
cn000
exonProbePos000
gdObject-class000
gdPlot 1.76 0.0257.96
getPar0.020.000.02
getSize000
ideogramTab000
intensity000
makeAnnotationTrack0.030.000.03
makeBaseTrack000
makeExonArray000
makeGene000
makeGeneModel000
makeGeneRegion000
makeGenericArray000
makeGenomeAxis000
makeIdeogram000
makeLegend000
makeRectangleOverlay0.120.000.14
makeSegmentation0.130.000.12
makeSmoothing0.150.000.19
makeTextOverlay0.110.000.13
makeTitle000
makeTranscript000
probestart0.000.010.01
segEnd000
segStart000
segments000
seqDataEx0.030.000.03
setPar0.020.000.02
showDisplayOptions000
unrData000
unrNProbes000
unrPositions000
yeastCons1000