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Package 169/467HostnameOS / ArchBUILDCHECKBUILD BIN
GeneAnswers 1.8.0
Gang Feng , Pan Du and Tian Xia
Snapshot Date: 2011-10-20 07:20:33 -0700 (Thu, 20 Oct 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_8/madman/Rpacks/GeneAnswers
Last Changed Rev: 56142 / Revision: 59457
Last Changed Date: 2011-06-13 11:59:45 -0700 (Mon, 13 Jun 2011)
lamb1 Linux (openSUSE 11.3) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  WARNINGS  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: GeneAnswers
Version: 1.8.0
Command: /home/biocbuild/bbs-2.8-bioc/R/bin/R CMD check --no-vignettes --timings GeneAnswers_1.8.0.tar.gz
StartedAt: 2011-10-20 12:44:23 -0700 (Thu, 20 Oct 2011)
EndedAt: 2011-10-20 12:52:31 -0700 (Thu, 20 Oct 2011)
EllapsedTime: 488.5 seconds
RetCode: 0
Status:  OK 
CheckDir: GeneAnswers.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.8-bioc/meat/GeneAnswers.Rcheck’
* using R version 2.13.2 (2011-09-30)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘GeneAnswers/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘GeneAnswers’ version ‘1.8.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘GeneAnswers’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 38.0Mb
  sub-directories of 1Mb or more:
    External  32.4Mb
    doc        3.6Mb
    data       1.5Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: DO.Rd:32-34: Dropping empty section \references
prepare_Rd: geneFunSummarize.Rd:21-23: Dropping empty section \details
prepare_Rd: plotGeneFunSummary.Rd:30-32: Dropping empty section \details
prepare_Rd: plotOntologyGraph.Rd:28-30: Dropping empty section \details
prepare_Rd: saveGeneFunSummary.Rd:18-20: Dropping empty section \details
prepare_Rd: saveGeneFunSummary.Rd:24-26: Dropping empty section \references
prepare_Rd: simplifyGeneFunSummary.Rd:18-20: Dropping empty section \details
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

GeneAnswers.Rcheck/00install.out:

* installing *source* package ‘GeneAnswers’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (GeneAnswers)

GeneAnswers.Rcheck/GeneAnswers-Ex.timings:

nameusersystemelapsed
DO0.4720.0080.494
DOLite0.0160.0000.028
DOLiteTerm0.0000.0040.004
DmIALite0.0760.0000.079
GeneAnswers-class27.477 0.50428.573
GeneAnswers-package20.070 0.16020.328
HsIALite0.1440.0000.153
MmIALite0.0040.0040.010
RnIALite0.0040.0000.006
buildNet20.009 0.17220.327
caBIO.PATHGenes0.0000.0040.001
caBIO2entrez000
categoryNet000
chartPlots0.0920.0240.291
drawTable0.9160.0080.924
entrez2caBIO000
geneAnnotationHeatmap000
geneAnswersBuilder19.565 0.13219.983
geneAnswersChartPlots22.110 0.15222.481
geneAnswersConceptNet19.465 0.16019.682
geneAnswersConceptRelation20.453 0.22420.707
geneAnswersConcepts21.273 0.18821.512
geneAnswersHeatmap21.166 0.14022.110
geneAnswersHomoMapping20.169 0.30420.561
geneAnswersReadable32.530 0.43233.218
geneAnswersSort20.245 0.22420.552
geneConceptNet000
geneFunSummarize8.3570.6569.097
getCategoryList0.2040.0160.272
getCategoryTerms0.0720.0000.085
getConceptTable0.9000.0160.983
getConnectedGraph18.441 0.22819.294
getDOLiteTerms0.0040.0000.010
getGOList11.125 0.26013.051
getHomoGeneIDs0.0720.0080.115
getMultiLayerGraphIDs21.581 0.21621.882
getNextGOIDs0.0480.0000.047
getPATHList0.0520.0000.050
getPATHTerms0.0360.0040.039
getREACTOMEPATHList000
getREACTOMEPATHTerms000
getSingleLayerGraphIDs0.0000.0040.002
getSymbols0.0360.0040.059
getTotalGeneNumber0.2000.0040.244
getcaBIOPATHList000
getcaBIOPATHTerms0.0000.0000.001
groupReport7.4050.0767.627
humanExpr0.0040.0000.007
humanGeneInput0.0040.0000.005
mouseExpr0.0080.0000.006
mouseGeneInput0.0040.0000.004
plotGeneFunSummary2.8080.0202.828
plotGraph8.5600.5249.084
plotOntologyGraph7.6690.6048.289
sampleGroupsData0.0840.0080.093
saveGeneFunSummary2.0320.0842.127
searchEntrez0.0000.0000.001
simplifyGeneFunSummary1.7520.0081.761
topCategory000
topCategoryGenes000
topDOLITE000
topDOLITEGenes000
topGO000
topGOGenes000
topPATH000
topPATHGenes0.0000.0040.000
topREACTOME.PATH0.0000.0000.001
topREACTOME.PATHGenes000
topcaBIO.PATH000