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Package 27/467HostnameOS / ArchBUILDCHECKBUILD BIN
Agi4x44PreProcess 1.12.0
Pedro Lopez-Romero
Snapshot Date: 2011-10-20 07:20:33 -0700 (Thu, 20 Oct 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_8/madman/Rpacks/Agi4x44PreProcess
Last Changed Rev: 54800 / Revision: 59457
Last Changed Date: 2011-04-13 15:27:35 -0700 (Wed, 13 Apr 2011)
lamb1 Linux (openSUSE 11.3) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  WARNINGS  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: Agi4x44PreProcess
Version: 1.12.0
Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch Agi4x44PreProcess_1.12.0.tar.gz
StartedAt: 2011-10-20 13:16:56 -0700 (Thu, 20 Oct 2011)
EndedAt: 2011-10-20 13:18:52 -0700 (Thu, 20 Oct 2011)
EllapsedTime: 116.0 seconds
RetCode: 0
Status:  OK 
CheckDir: Agi4x44PreProcess.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.8-bioc/meat/Agi4x44PreProcess.Rcheck'
* using R version 2.13.2 (2011-09-30)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'Agi4x44PreProcess/DESCRIPTION' ... OK
* this is package 'Agi4x44PreProcess' version '1.12.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'Agi4x44PreProcess' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under inst/doc ... NOTE
  'qpdf' made some significant size reductions:
     compacted 'Agi4x44PreProcess.pdf' from 777Kb to 262Kb
  consider running tools::compactPDF() on these files
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

Agi4x44PreProcess.Rcheck/00install.out:

* installing *source* package 'Agi4x44PreProcess' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (Agi4x44PreProcess)

Agi4x44PreProcess.Rcheck/Agi4x44PreProcess-Ex.timings:

nameusersystemelapsed
Agi4x44PreProcess-package0.0010.0010.002
BGandNorm000
BoxPlot0.0000.0010.000
CV.rep.probes0.0010.0000.001
HeatMap000
MVAplotMED000
MVAplotMEDctrl2.7120.0712.857
PCAplot000
RLE000
boxplotNegCtrl0.0000.0000.001
build.eset000
build.mappings0.0010.0000.000
dd000
ensembl.htmlpage0.0000.0000.001
filter.NonUnifOL0.0000.0010.000
filter.PopnOL0.0010.0000.000
filter.control0.0000.0000.001
filter.isfound000
filter.probes0.0000.0000.001
filter.saturated0.0000.0010.001
filter.wellaboveBG000
filter.wellaboveNEG000
genes.rpt.agi4.2710.3945.857
gsea.files0.0010.0000.000
hierclus0.0010.0000.001
plotDensity0.0000.0010.000
read.AgilentFE0.3010.0090.312
read.targets0.0020.0010.003
summarize.probe000
targets000
write.eset0.0000.0000.001